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The map label for this gene is yhcF [H]

Identifier: 226224328

GI number: 226224328

Start: 1773708

End: 1774076

Strand: Reverse

Name: yhcF [H]

Synonym: Lm4b_01739

Alternate gene names: 226224328

Gene position: 1774076-1773708 (Counterclockwise)

Preceding gene: 226224329

Following gene: 226224327

Centisome position: 60.91

GC content: 39.84

Gene sequence:

>369_bases
ATGAATCCGACCTTTCATGCAGATAAACCAATCTATAGTCAAATCTCTGACTGGATGAAAAAACAAATGATTACAGGTGA
ATGGAAAGGGGAGGATAAGTTGCCTTCTGTTCGGGAAATGGGCGTAAAGCTTGCAGTAAATCCTAATACCGTTAGCCGTG
CTTATCAAGAATTAGAACGAGCGGGTTATATTTATGCAAAACGAGGGATGGGATCATTCGTCACTTCCGACAAAGCACTT
TTCGACCAATTAAAAAAAGAGTTAGCTGATGAAATTTCAGAACGCTTTTTGGAAGAAGCGAGGAGCATCGGTTTAGATGA
CCAAGCAGCAATTGAATTACTAATAAAAAGGAGCCGCAACTATGAATGA

Upstream 100 bases:

>100_bases
GCTACCATGCTGATTCCTAGTTTTTTTGTGCTTGACAATAAATGAAATCCAAGTGTACTATTTACTTAATACACTAGTTT
CGTTTAAAAAGGAGGTAATA

Downstream 100 bases:

>100_bases
AAACCTGATTACAATTACGGGATTAACGAAAAAATATCGAAAAAGAAAACCGTTAAATGATATTAACTTATCTCTTCAAA
AAGGCAAGATCATCGGGCTT

Product: transcriptional regulator (GntR family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKAL
FDQLKKELADEISERFLEEARSIGLDDQAAIELLIKRSRNYE

Sequences:

>Translated_122_residues
MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKAL
FDQLKKELADEISERFLEEARSIGLDDQAAIELLIKRSRNYE
>Mature_122_residues
MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKAL
FDQLKKELADEISERFLEEARSIGLDDQAAIELLIKRSRNYE

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14034; Mature: 14034

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEECCHHHHHHHHHHHH
AGYIYAKRGMGSFVTSDKALFDQLKKELADEISERFLEEARSIGLDDQAAIELLIKRSRN
HCCHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
YE
CC
>Mature Secondary Structure
MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEECCHHHHHHHHHHHH
AGYIYAKRGMGSFVTSDKALFDQLKKELADEISERFLEEARSIGLDDQAAIELLIKRSRN
HCCHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
YE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]