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The map label for this gene is yfcH [C]

Identifier: 226224297

GI number: 226224297

Start: 1744174

End: 1745076

Strand: Direct

Name: yfcH [C]

Synonym: Lm4b_01708

Alternate gene names: 226224297

Gene position: 1744174-1745076 (Clockwise)

Preceding gene: 226224293

Following gene: 226224300

Centisome position: 59.88

GC content: 36.54

Gene sequence:

>903_bases
TTGCATATCTTACTTACAGGCGCAACAGGTTTTATTGGTGATCATTTAGTGCATGAATTAGAAAAATCTGATCACGAGCT
TTATATTTTAACAAGACAAAAGCTAAAAAACCGCGCAAATGTACACTATATTGAATGGTTAAATGAAGATAAATTGCCGA
ATTTAGAAGATTTACCAGTGGATGTTTGTATTAATTTTGCTGGTGCTGGTTTGATGGATGAAAAATGGACTTACGATAGA
AAGAAAGTGATTGTAAATAGCCGCATCGAAGCTACTTCAGCACTCTTATCGATTGTGAAAAAAATGAAATCAAAACCAAA
ATTGTGGATTAATGCAAGTGCAATTGGAGCCTACACTTCCTCCAAGTCAACGATTTATCTCGATACAGAAGAAAATAATT
ACGCAGATAACTTCTTAGGAAAAACAGTCTATGAATGGGAAAAAACAGCGAGTGCGGCAAGTGATTTGGGTATTCGTGTT
GTTTATGCTCGCTTTGGTCTTGTACTTGGGACTGATGGTGGCTCGTTCCCTGTTTTCGAAAAATTATTCCAAACTTATAC
AGGGGGACGCTTTGGTAACGGCAGACAATGGTATTCTTGGATCCATGTGGATGATGTTGTGGCGGCAATCTTATTTATTT
TTGACCACGAACAAATAAACGGTGTTGTTAATTTTACAGCCCCTCATCCTGTTCAAGAAAAGAAATTTGCTGAACGCCTT
GGAAAAAAAATGCATAAACCGTATAAAACTCCTGTGCCTAAAAAAATTATTAAATTCATTCTAGGTGAACGTGCCATGAC
TATTTTGGACAGTCAACGTGCTTATCCGGAAAAACTGATGAGTAACCATTTTGAATTTCGCTTTGAAACGTTACAAGAAG
CTTTAGATGACTTGTTAGATTGA

Upstream 100 bases:

>100_bases
CATAATCCGCCTCCTTCTCCTATCTATCATACCGCAAAAATTGGTTTTAATACTACTAAAAAGGGAATAAACTAGTTAGG
ACAATGAAGAGGTGATAAAA

Downstream 100 bases:

>100_bases
TAAAAAACCAGATTCTGATTTTACTCAGAATCTGGTTTTTTTGTTTCTTCTTCAAGCGGGAAATCAAGGACTACTTGACT
ATTTGCAAGTGGTCTTTTTT

Product: CDP-abequose synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MHILLTGATGFIGDHLVHELEKSDHELYILTRQKLKNRANVHYIEWLNEDKLPNLEDLPVDVCINFAGAGLMDEKWTYDR
KKVIVNSRIEATSALLSIVKKMKSKPKLWINASAIGAYTSSKSTIYLDTEENNYADNFLGKTVYEWEKTASAASDLGIRV
VYARFGLVLGTDGGSFPVFEKLFQTYTGGRFGNGRQWYSWIHVDDVVAAILFIFDHEQINGVVNFTAPHPVQEKKFAERL
GKKMHKPYKTPVPKKIIKFILGERAMTILDSQRAYPEKLMSNHFEFRFETLQEALDDLLD

Sequences:

>Translated_300_residues
MHILLTGATGFIGDHLVHELEKSDHELYILTRQKLKNRANVHYIEWLNEDKLPNLEDLPVDVCINFAGAGLMDEKWTYDR
KKVIVNSRIEATSALLSIVKKMKSKPKLWINASAIGAYTSSKSTIYLDTEENNYADNFLGKTVYEWEKTASAASDLGIRV
VYARFGLVLGTDGGSFPVFEKLFQTYTGGRFGNGRQWYSWIHVDDVVAAILFIFDHEQINGVVNFTAPHPVQEKKFAERL
GKKMHKPYKTPVPKKIIKFILGERAMTILDSQRAYPEKLMSNHFEFRFETLQEALDDLLD
>Mature_300_residues
MHILLTGATGFIGDHLVHELEKSDHELYILTRQKLKNRANVHYIEWLNEDKLPNLEDLPVDVCINFAGAGLMDEKWTYDR
KKVIVNSRIEATSALLSIVKKMKSKPKLWINASAIGAYTSSKSTIYLDTEENNYADNFLGKTVYEWEKTASAASDLGIRV
VYARFGLVLGTDGGSFPVFEKLFQTYTGGRFGNGRQWYSWIHVDDVVAAILFIFDHEQINGVVNFTAPHPVQEKKFAERL
GKKMHKPYKTPVPKKIIKFILGERAMTILDSQRAYPEKLMSNHFEFRFETLQEALDDLLD

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=304, Percent_Identity=27.6315789473684, Blast_Score=149, Evalue=4e-36,
Organism=Escherichia coli, GI1788642, Length=301, Percent_Identity=34.5514950166113, Blast_Score=189, Evalue=2e-49,
Organism=Drosophila melanogaster, GI28573846, Length=303, Percent_Identity=28.7128712871287, Blast_Score=141, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 34309; Mature: 34309

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHILLTGATGFIGDHLVHELEKSDHELYILTRQKLKNRANVHYIEWLNEDKLPNLEDLPV
CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCEEEEEECCCCCCCCCCCCCH
DVCINFAGAGLMDEKWTYDRKKVIVNSRIEATSALLSIVKKMKSKPKLWINASAIGAYTS
HHHHHHCCCCCCCCCCCCCHHHEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHHHEEEEC
SKSTIYLDTEENNYADNFLGKTVYEWEKTASAASDLGIRVVYARFGLVLGTDGGSFPVFE
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCEEEECCCCCCHHHH
KLFQTYTGGRFGNGRQWYSWIHVDDVVAAILFIFDHEQINGVVNFTAPHPVQEKKFAERL
HHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHH
GKKMHKPYKTPVPKKIIKFILGERAMTILDSQRAYPEKLMSNHFEFRFETLQEALDDLLD
HHHHCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHILLTGATGFIGDHLVHELEKSDHELYILTRQKLKNRANVHYIEWLNEDKLPNLEDLPV
CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCEEEEEECCCCCCCCCCCCCH
DVCINFAGAGLMDEKWTYDRKKVIVNSRIEATSALLSIVKKMKSKPKLWINASAIGAYTS
HHHHHHCCCCCCCCCCCCCHHHEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHHHEEEEC
SKSTIYLDTEENNYADNFLGKTVYEWEKTASAASDLGIRVVYARFGLVLGTDGGSFPVFE
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCEEEECCCCCCHHHH
KLFQTYTGGRFGNGRQWYSWIHVDDVVAAILFIFDHEQINGVVNFTAPHPVQEKKFAERL
HHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHH
GKKMHKPYKTPVPKKIIKFILGERAMTILDSQRAYPEKLMSNHFEFRFETLQEALDDLLD
HHHHCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA