| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
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The map label for this gene is alaS
Identifier: 226224105
GI number: 226224105
Start: 1516195
End: 1518834
Strand: Reverse
Name: alaS
Synonym: Lm4b_01514
Alternate gene names: 226224105
Gene position: 1518834-1516195 (Counterclockwise)
Preceding gene: 226224106
Following gene: 226224104
Centisome position: 52.15
GC content: 39.43
Gene sequence:
>2640_bases ATGAAACAATTATCAAGCGCTGAAGTAAGACAGTTATTTTTAGATTTCTTTAAAGAAAAAGGGCATACTATCGAACCTAG TGCACCACTTGTACCAAATAATGATCCAACAATTCTTTGGATTAACAGTGGTGTAGCAACCATGAAAAAATACTTTGATG GTTCCGTTATTCCAGATAATCCAAGAATGGCGAACGCTCAAAAATCAATCCGTACAAATGACATTGAAAACGTTGGTAAA ACAGCGCGTCATCATACATTCTTTGAAATGCTAGGAAACTTTTCTATCGGTGATTATTTTAAAGAAGGGGCGATTGTTTT TGCTTGGGAATTCCTAACGAGCCCTAAATGGATTGGTTTTGATCCAGATAAATTGTATGTGACTGTGTATCCAGAAGATG AAGAAGCGAAAACGTTATGGCGCGAAAAAATTGGTTTAAGTGATGATCATATCGTCGAAATTGAAGATAATTTCTGGGAT ATCGGTATTGGACCAAGTGGCCCAGACAGCGAAATTTTCTATGACCGTGGACCTGCTTTCGGTGACGATGCAAGTGATCC AGAATTATATCCAGGCGGAGAAAATGAGCGTTATTTAGAAATTTGGAACTTAGTATTTTCTCAGTTCAACCACAATCCAG ATGGAACTTACACTCCGCTACCAAAACAAAACATTGATACAGGGATGGGACTTGAACGAATGGTTTCCATCATCCAAGAC GCACCAACTAACTTTGAAACAGATTTATTCATGCCTATTATTCGTGAAGTTGAACAAATCGCTGGCGTGAAATATGGCCA TTCTCAAGAAAATGATGTGGCATTTAAAGTGATTGCTGACCATATTCGTACTGTAGCATTTGCAATCGGTGACGGCGCTT TACCATCCAACGAAGGACGCGGATATATTTTACGTCGTTTACTTCGCCGTGCGGTTCGTTATGCAAAAGTCCTAACAATC AACGAACCATTCATGTACAAATTAGTACCAGTAGTTGGGAAAATCATGAATAGTTTCTATCCGGAAGTAGAAAACCAAAC AGACTTTATCCAAAAAGTCATTCGTACAGAAGAAGAACGTTTCCACGAAACATTAAACGAAGGTCTAGCAATTTTGGAAA CAATCCTAAAAACTGCGAAAGAAACAAATGAACAAATTATTAAAGGCGCAGACATTTTTAAATTATATGATACATTCGGC TTCCCTGTAGAATTAACAGAAGAATATGCAGAAGACCATGGCTTAAAAGTGGATCACGCTGGCTTCGAAGCAGAAATGAA AGAACAACGGGATCGTGCTCGCTCGGCTCGTGCTGATGTAAAATCGATGCAAGTCCAAGGCGAACTACTTGCTAATTTAA CAGAAAAAAGTGCATTTGTTGGCTATAATTCAACAGAGCATGTTTCAGAAATCTTGTATTTAATCCAAGATGACACGCTT GTGGAGGAAGTTGCAGCTGGAAGTGAAGCACAAGTCATCTTCAAAGAAACACCATTTTATGCAGAAAGCGGCGGACAAGT TGCTGACAAAGGAACCATCGAGAGCGAAACTGGTCTTGCTTATGTAGAAGATGTACAAAAAGCGCCAAACAAACAAAATT TACACCGTATTTCTGTCAAAGAAGGCGTATTAAAAACAGGCGACACAGTGAAACTTGCTGTTGATAAAGTAAAACGTCGC GAAACAATCAAAAATCATACAGCAACACACCTTTTACACCGCGCACTCAAAGACACATTAGGCGAGCATGTTAACCAAGC TGGATCTCTTGTTTCACCGGATCGTTTACGTTTTGACTTCTCTCATTTTGGTCAAATTACAGAAGAAGAATTAACGAAAA TGGAAGAAATCGTGAATGAAAAAATCTGGGAACAAATCAATGTTGTGATTGAAGAAATGCCAATAGCAGAAGCAAAAGAA CTTGGCGCTATGGCACTATTTGGCGAAAAATACGGCGATATCGTACGAGTTGTACAAGTAGGCAAATACAGCATTGAACT ATGTGGCGGTGTCCATGTGCGTAATACAGCTGATATTGGTCTATTCAAAATCGTATCCGAAACAGGTATCGGAGCGGGAA CAAGACGTATCGAAGCTGTTACTGGCAAAGAAGCCTATCGCTTTGTAACAGAACAAGAAAACACATTAAAACAGGCAGCG AGTCTACTAAAAACAACAACCAAAGAAACACCGCAAAAAGTAGAACAATTACAAGCTGACTTACGTGAAGTGAAACGCGA GAATGAATCACTATTAAGTAAATTAGCGAGTGCAGCAAGCGCGGATATTTTTGAATCACCAGAAGAAATCGGCGGCGTAA AAGTGATTGCAAAACAAGTAAATGCAAAAGATATGAACCAATTACGTCAATTCGTGGATAACTGGAAAGATAAAAAAATT GGAGGCATTCTTGTTTTAGGCGCTGTTCAAGGCGATAAAGTAAACTTAATCTCCGCAGTCTCTGAAGAAGCAATCAAAGC AGGTTACCATGCAGGTAAATTATTAAAAGAAGTGGCAACACGTTGCGGCGGTAATGGTGGTGGACGTCCTGATATGGCAC AAGCTGGCGGTAAAAATCCAGCAGAACTAGGAACAGCCCTTGATTACGTTTCTACTTGGGTAAAAGAACAACAAGCATAA
Upstream 100 bases:
>100_bases TCATTGCAAACAGGGTGGTACCGCGATTTTACTGAAATCGTCCCTGTGAGCAATCATATAGGCTTTTTTTGTTGTTAAAA CCAAAAGGAGGAAATAAAAA
Downstream 100 bases:
>100_bases ATTTCATCAAAGTGCCTCATTTTTCTTTGTTATTTCCGTTCACATAGTGTAAAATGAAAGGAGATACATGAAGGAATGAG GTGCTTCGATTATGGATTCA
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 879; Mature: 879
Protein sequence:
>879_residues MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMANAQKSIRTNDIENVGK TARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEIEDNFWD IGIGPSGPDSEIFYDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSIIQD APTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTI NEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFG FPVELTEEYAEDHGLKVDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEKSAFVGYNSTEHVSEILYLIQDDTL VEEVAAGSEAQVIFKETPFYAESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPIAEAKE LGAMALFGEKYGDIVRVVQVGKYSIELCGGVHVRNTADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAA SLLKTTTKETPQKVEQLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKI GGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRCGGNGGGRPDMAQAGGKNPAELGTALDYVSTWVKEQQA
Sequences:
>Translated_879_residues MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMANAQKSIRTNDIENVGK TARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEIEDNFWD IGIGPSGPDSEIFYDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSIIQD APTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTI NEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFG FPVELTEEYAEDHGLKVDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEKSAFVGYNSTEHVSEILYLIQDDTL VEEVAAGSEAQVIFKETPFYAESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPIAEAKE LGAMALFGEKYGDIVRVVQVGKYSIELCGGVHVRNTADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAA SLLKTTTKETPQKVEQLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKI GGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRCGGNGGGRPDMAQAGGKNPAELGTALDYVSTWVKEQQA >Mature_879_residues MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMANAQKSIRTNDIENVGK TARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEIEDNFWD IGIGPSGPDSEIFYDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSIIQD APTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTI NEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFG FPVELTEEYAEDHGLKVDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEKSAFVGYNSTEHVSEILYLIQDDTL VEEVAAGSEAQVIFKETPFYAESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPIAEAKE LGAMALFGEKYGDIVRVVQVGKYSIELCGGVHVRNTADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAA SLLKTTTKETPQKVEQLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKI GGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRCGGNGGGRPDMAQAGGKNPAELGTALDYVSTWVKEQQA
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=971, Percent_Identity=36.0453141091658, Blast_Score=523, Evalue=1e-148, Organism=Homo sapiens, GI38569417, Length=904, Percent_Identity=30.8628318584071, Blast_Score=386, Evalue=1e-107, Organism=Homo sapiens, GI217416402, Length=355, Percent_Identity=25.3521126760563, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI13376886, Length=300, Percent_Identity=26, Blast_Score=80, Evalue=1e-14, Organism=Escherichia coli, GI1789048, Length=888, Percent_Identity=43.8063063063063, Blast_Score=707, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=977, Percent_Identity=33.2650972364381, Blast_Score=490, Evalue=1e-138, Organism=Caenorhabditis elegans, GI17536681, Length=742, Percent_Identity=33.4231805929919, Blast_Score=354, Evalue=9e-98, Organism=Saccharomyces cerevisiae, GI6324911, Length=970, Percent_Identity=37.6288659793814, Blast_Score=554, Evalue=1e-158, Organism=Saccharomyces cerevisiae, GI6324288, Length=300, Percent_Identity=21, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24582809, Length=958, Percent_Identity=35.1774530271399, Blast_Score=501, Evalue=1e-141, Organism=Drosophila melanogaster, GI45552267, Length=958, Percent_Identity=35.1774530271399, Blast_Score=501, Evalue=1e-141, Organism=Drosophila melanogaster, GI24658214, Length=901, Percent_Identity=29.4117647058824, Blast_Score=319, Evalue=6e-87,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 98055; Mature: 98055
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN CCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCC PRMANAQKSIRTNDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEHHHCCCCCCCC DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEIEDNFWDIGIGPSGPDSEIFYDRGPAF CCCEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCEEEECCCCCCCCCCEEECCCCCC GDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSIIQD CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC APTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSNEGR CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC GYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTEEER HHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH FHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDHGLKVDHA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCEEECC GFEAEMKEQRDRARSARADVKSMQVQGELLANLTEKSAFVGYNSTEHVSEILYLIQDDTL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCHH VEEVAAGSEAQVIFKETPFYAESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVK HHHHHCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEHHH EGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDF HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEECH SHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHH GKYSIELCGGVHVRNTADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAA CCEEEEEECCEEECCCCCCHHHHHHHHCCCCCCCHHEEEECCHHHHHHHHHHHHHHHHHH SLLKTTTKETPQKVEQLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQV HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHC NAKDMNQLRQFVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVAT CHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RCGGNGGGRPDMAQAGGKNPAELGTALDYVSTWVKEQQA HCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN CCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCC PRMANAQKSIRTNDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEHHHCCCCCCCC DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEIEDNFWDIGIGPSGPDSEIFYDRGPAF CCCEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCEEEECCCCCCCCCCEEECCCCCC GDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSIIQD CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC APTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSNEGR CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC GYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTEEER HHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH FHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDHGLKVDHA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCEEECC GFEAEMKEQRDRARSARADVKSMQVQGELLANLTEKSAFVGYNSTEHVSEILYLIQDDTL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCHH VEEVAAGSEAQVIFKETPFYAESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVK HHHHHCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEHHH EGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDF HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEECH SHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHH GKYSIELCGGVHVRNTADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAA CCEEEEEECCEEECCCCCCHHHHHHHHCCCCCCCHHEEEECCHHHHHHHHHHHHHHHHHH SLLKTTTKETPQKVEQLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQV HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHC NAKDMNQLRQFVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVAT CHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RCGGNGGGRPDMAQAGGKNPAELGTALDYVSTWVKEQQA HCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11679669 [H]