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The map label for this gene is yqgF [C]

Identifier: 226224103

GI number: 226224103

Start: 1515418

End: 1515834

Strand: Reverse

Name: yqgF [C]

Synonym: Lm4b_01512

Alternate gene names: 226224103

Gene position: 1515834-1515418 (Counterclockwise)

Preceding gene: 226224104

Following gene: 226224102

Centisome position: 52.04

GC content: 41.25

Gene sequence:

>417_bases
ATGAGAATAATGGGTTTAGATGTCGGCTCGAAAACAGTCGGCGTAGCGATAAGTGATCCACTTGGTTGGACCGCACAAGG
TGTGGAAACCATTCAGATTGACGAGAATAGAAAGCAATTCGGCTATGACCGCGTAAAAGAGCTCGTGCTTGAATACGAAG
TGGAAAAAGTCGTAGTTGGACTACCTAAGAATATGAATAACACTATTGGACCTCGTGCTGAAAGTTCCAAAATATATGCT
GAAGTACTTGAGTCAAGAATTGGACTCCCTGTTGTACTTTGGGATGAACGTTTGACCACTTCTGCCGCTGAAAGAACTTT
GATTGAAGCAGACGTTTCGCGTAAAAAACGAAAAGAAGTGATTGATAAGTTAGCTGCAGTAATGATTTTACAGTCCTATC
TGGACACTACTAATTAA

Upstream 100 bases:

>100_bases
GTCACAAGGATGCTAGAAGTATGATACGTCGTTTAGAACGAGATGAAATTATCGAGGAACTTGTCAAAGCGTATCTGAAA
AATAACGAAATTGGTGAGAA

Downstream 100 bases:

>100_bases
TTTGAGGTGAATTTAATGGCAGAAGAACATAACCATAATCATGAAGAAGAAAATATTATTTGGATCACAAACGAAGAAGG
AAAAGAAGAAGCTTACGAAA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKNMNNTIGPRAESSKIYA
EVLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDKLAAVMILQSYLDTTN

Sequences:

>Translated_138_residues
MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKNMNNTIGPRAESSKIYA
EVLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDKLAAVMILQSYLDTTN
>Mature_138_residues
MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKNMNNTIGPRAESSKIYA
EVLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDKLAAVMILQSYLDTTN

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=30.8270676691729, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15422; Mature: 15422

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVG
CEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHHHHEEE
LPKNMNNTIGPRAESSKIYAEVLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEV
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
IDKLAAVMILQSYLDTTN
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVG
CEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHHHHEEE
LPKNMNNTIGPRAESSKIYAEVLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEV
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
IDKLAAVMILQSYLDTTN
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]