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The map label for this gene is ybeY [C]

Identifier: 226224066

GI number: 226224066

Start: 1481286

End: 1481771

Strand: Reverse

Name: ybeY [C]

Synonym: Lm4b_01475

Alternate gene names: 226224066

Gene position: 1481771-1481286 (Counterclockwise)

Preceding gene: 226224067

Following gene: 226224065

Centisome position: 50.87

GC content: 39.3

Gene sequence:

>486_bases
ATGACGGTCTTAGAAATTGATTTACTAGACGAAACCAAGAATTTACTTGATGAAGATAAACAGCTAGTTGAAAATATTTT
ACAATTTGCGGCTGAGTATTTAAAAATCGAACAAGGGACAGAGCTGTCACTCACCTTTACAACGAATGAAGGTATTCGTG
AGATTAACCGAGAATATCGGGATAAAGATCAAGCAACCGATGTTATTTCGTTCGCGCTAGAAGAAATGGGCGACGGGGAA
ACGGAGATTGATTGGGGCGAATTTGATCTTGAAACGCCTCGTATGCTTGGCGATATAATTATTTCGACTGAAAAAGCAGA
AGAGCAAGCCAAAGATTACGGACATACAAAAGCAAGAGAATTAGGTTTCTTAGCAGTTCATGGATTGCTGCACTTGCTTG
GGTATGATCATATGGAGCCTGACGAAGAGAAAATCATGTTTGGCTTACAAAAAGAAGTGTTGGATGCTTATGGACTTGAA
AGATAG

Upstream 100 bases:

>100_bases
ATTAAAATCATTCGTGACACCTTAATCGCCACATTAAATGGAATATATCATCAACGAATTCAATATCCTGATGACAAAGA
TTGAAATAGGAGGACAAAAG

Downstream 100 bases:

>100_bases
AAAATACAAACGTAGTAAAAATTATGCAGAATCTTTTCATCATGCTTTTACTGGACTAAAAACTGCTTTTTTAGAAGAAC
GTAATATGAGATTTCATACT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTVLEIDLLDETKNLLDEDKQLVENILQFAAEYLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGE
TEIDWGEFDLETPRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE
R

Sequences:

>Translated_161_residues
MTVLEIDLLDETKNLLDEDKQLVENILQFAAEYLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGE
TEIDWGEFDLETPRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE
R
>Mature_160_residues
TVLEIDLLDETKNLLDEDKQLVENILQFAAEYLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGET
EIDWGEFDLETPRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLER

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Homo sapiens, GI54607072, Length=127, Percent_Identity=37.007874015748, Blast_Score=64, Evalue=5e-11,
Organism=Escherichia coli, GI1786880, Length=163, Percent_Identity=30.6748466257669, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 18500; Mature: 18369

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLEIDLLDETKNLLDEDKQLVENILQFAAEYLKIEQGTELSLTFTTNEGIREINREYR
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHH
DKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKDYGHTKARE
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHH
LGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLER
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TVLEIDLLDETKNLLDEDKQLVENILQFAAEYLKIEQGTELSLTFTTNEGIREINREYR
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHH
DKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKDYGHTKARE
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHH
LGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLER
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]