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The map label for this gene is recO

Identifier: 226224061

GI number: 226224061

Start: 1478012

End: 1478779

Strand: Reverse

Name: recO

Synonym: Lm4b_01470

Alternate gene names: 226224061

Gene position: 1478779-1478012 (Counterclockwise)

Preceding gene: 226224063

Following gene: 226224060

Centisome position: 50.77

GC content: 36.59

Gene sequence:

>768_bases
ATGGAGAAATGCGAAGGAATCGTGATACGGCAAACGAGTTACCGTGAATCAGATAAAATTGTCCGAATGTATACACGTGA
ATTCGGGAAGATTGGTGTGGTGGCTCGTGGGGCAAAAAAAACGAAAAGCAGATTAGCTGCAGTAACTCAATTATTTACGA
ATGGTTATTTTACTTTCTTTGGTAGCAATGGCCTTGGTACGCTTCAGCAAGGGGAAGTCATAGAAAATTTTTCTTCTATT
CAGCAAGATATTTTTATGACTGCTTATGCGACTTATGTTTGCGAATTGCTTGATAAAGCCACTGAAGAACGCCAACCGAA
TCCATATCTATATGAATTAACTTTTCAAATTTTGCGAGATATAAATGAAGGATATGATCCGCAAATTCTCACTCAAATTT
TTGAAATGAAAATGTTACCGGTGCTTGGTCTTTACCCAACAATGGATAAGTGCGCCATTTGTGGTGAAACAACAGGTCAT
TTTGATTTTTCAACAAGTAGTAATGGCATTATCTGTCATCGTTGCTTTGAGAAAGACCGTTACAGAATGCATTTGCCAGA
AAATGTCGTAAAATTGCTGCGTTTGTTTTTCATCTTCCAATTAGATAGACTAGGAAACATCGATGTGAAGCCAGAAACGA
AAGAATGGCTTCAAAAAGCAATTGATACATACTACGATGAATACTCTGGTTTGTATTTAAAAAGCAGGAAATTTTTGCGC
GAAATGGACAAATGGGAAAATATGTTAAAAAAAGATAGCGATGATTGA

Upstream 100 bases:

>100_bases
TTTTACAATAGGCATCCGTGGAAAGATAGCAAAAAATATAAAAAGACATAATCATTAAGAAAATGTTATAATAAGACGTG
TAAAAAGGGAGGCTTACCAC

Downstream 100 bases:

>100_bases
CTTTTTAGCAAAAATACAGTATCTTTTAATATATCAACTAATAGGTACGTTGAAGGAAAATAGTAACAAAAAGCTCTATT
TTTAGCGAGTCCGGGTTTGG

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MEKCEGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGSNGLGTLQQGEVIENFSSI
QQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDINEGYDPQILTQIFEMKMLPVLGLYPTMDKCAICGETTGH
FDFSTSSNGIICHRCFEKDRYRMHLPENVVKLLRLFFIFQLDRLGNIDVKPETKEWLQKAIDTYYDEYSGLYLKSRKFLR
EMDKWENMLKKDSDD

Sequences:

>Translated_255_residues
MEKCEGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGSNGLGTLQQGEVIENFSSI
QQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDINEGYDPQILTQIFEMKMLPVLGLYPTMDKCAICGETTGH
FDFSTSSNGIICHRCFEKDRYRMHLPENVVKLLRLFFIFQLDRLGNIDVKPETKEWLQKAIDTYYDEYSGLYLKSRKFLR
EMDKWENMLKKDSDD
>Mature_255_residues
MEKCEGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFFGSNGLGTLQQGEVIENFSSI
QQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRDINEGYDPQILTQIFEMKMLPVLGLYPTMDKCAICGETTGH
FDFSTSSNGIICHRCFEKDRYRMHLPENVVKLLRLFFIFQLDRLGNIDVKPETKEWLQKAIDTYYDEYSGLYLKSRKFLR
EMDKWENMLKKDSDD

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 29835; Mature: 29835

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKCEGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFF
CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCCEEEEE
GSNGLGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
INEGYDPQILTQIFEMKMLPVLGLYPTMDKCAICGETTGHFDFSTSSNGIICHRCFEKDR
HCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEECCCCCCEEEEECHHCCC
YRMHLPENVVKLLRLFFIFQLDRLGNIDVKPETKEWLQKAIDTYYDEYSGLYLKSRKFLR
CEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
EMDKWENMLKKDSDD
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MEKCEGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSRLAAVTQLFTNGYFTFF
CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCCEEEEE
GSNGLGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATEERQPNPYLYELTFQILRD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
INEGYDPQILTQIFEMKMLPVLGLYPTMDKCAICGETTGHFDFSTSSNGIICHRCFEKDR
HCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEECCCCCCEEEEECHHCCC
YRMHLPENVVKLLRLFFIFQLDRLGNIDVKPETKEWLQKAIDTYYDEYSGLYLKSRKFLR
CEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
EMDKWENMLKKDSDD
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]