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The map label for this gene is ybdF [H]

Identifier: 226224031

GI number: 226224031

Start: 1445035

End: 1445418

Strand: Reverse

Name: ybdF [H]

Synonym: Lm4b_01440

Alternate gene names: 226224031

Gene position: 1445418-1445035 (Counterclockwise)

Preceding gene: 226224033

Following gene: 226224030

Centisome position: 49.62

GC content: 32.03

Gene sequence:

>384_bases
ATGAATTACGAACAAATTTTACAAGAAAAAGTCGCGCTTTGTCTGACTTTGCAAGCTGCCAAAGAAACATTTCCGTTTGA
TAAAAAAACGCACGCTTTAACAGTTGGTGGGAAGATATTTGCGCTCATACATATGTATCACGGGGATTTATATGTTAGCG
TTAAATGTCAGCCTGAAAGAATTGATTTGTTGCGTGATGAATATTTGAGCATAAAACCAGGTTACCATTTAAATAAAAAG
CATTGGATTACACTTGTAATAAATGAAAATTACGATGTGGAAGCAGAAACTGAATTTGCCTTAATCAAAAATAGTTATCA
GCTTATTTTTGATAAACTACCGAAAAAAGCACAAAATACTGTAAAATTTTCTGCAAATGATTAA

Upstream 100 bases:

>100_bases
GAAAAAGCACAATTACTACTATTTTAACATGGTTAGTGTAGCAAAGAAAGCATACACACATAAATAAATGTTATAATATC
AAAATAAGGAGGAGAGCCGG

Downstream 100 bases:

>100_bases
AGAAAACAAATAATTCTTTACAAAAAAGAAGTGCATGCTATAATAATTGTTGTACGATAATTTCATAGACGTTACCACAG
GGGGGGCTTCTTAGCTGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MNYEQILQEKVALCLTLQAAKETFPFDKKTHALTVGGKIFALIHMYHGDLYVSVKCQPERIDLLRDEYLSIKPGYHLNKK
HWITLVINENYDVEAETEFALIKNSYQLIFDKLPKKAQNTVKFSAND

Sequences:

>Translated_127_residues
MNYEQILQEKVALCLTLQAAKETFPFDKKTHALTVGGKIFALIHMYHGDLYVSVKCQPERIDLLRDEYLSIKPGYHLNKK
HWITLVINENYDVEAETEFALIKNSYQLIFDKLPKKAQNTVKFSAND
>Mature_127_residues
MNYEQILQEKVALCLTLQAAKETFPFDKKTHALTVGGKIFALIHMYHGDLYVSVKCQPERIDLLRDEYLSIKPGYHLNKK
HWITLVINENYDVEAETEFALIKNSYQLIFDKLPKKAQNTVKFSAND

Specific function: Unknown

COG id: COG2315

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786793, Length=122, Percent_Identity=32.7868852459016, Blast_Score=72, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007351 [H]

Pfam domain/function: PF04237 DUF419 [H]

EC number: NA

Molecular weight: Translated: 14748; Mature: 14748

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYEQILQEKVALCLTLQAAKETFPFDKKTHALTVGGKIFALIHMYHGDLYVSVKCQPER
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEEECCCEEEEEEECCHH
IDLLRDEYLSIKPGYHLNKKHWITLVINENYDVEAETEFALIKNSYQLIFDKLPKKAQNT
HHHHHHCCEEECCCCEECCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCE
VKFSAND
EEEECCC
>Mature Secondary Structure
MNYEQILQEKVALCLTLQAAKETFPFDKKTHALTVGGKIFALIHMYHGDLYVSVKCQPER
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEEECCCEEEEEEECCHH
IDLLRDEYLSIKPGYHLNKKHWITLVINENYDVEAETEFALIKNSYQLIFDKLPKKAQNT
HHHHHHCCEEECCCCEECCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCE
VKFSAND
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]