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The map label for this gene is yqxC [H]

Identifier: 226223967

GI number: 226223967

Start: 1372914

End: 1373738

Strand: Direct

Name: yqxC [H]

Synonym: Lm4b_01375

Alternate gene names: 226223967

Gene position: 1372914-1373738 (Clockwise)

Preceding gene: 226223966

Following gene: 226223968

Centisome position: 47.14

GC content: 38.91

Gene sequence:

>825_bases
ATGACAATAAAAAAAGAACGCGCAGATATTCTGCTAGTAGAACAAGGACTATTTGAAACAAGAGAAAAGGCAAAACGTGC
AATTATGGCGGGAATTGTTTATCGGAAAGAAGAACGTGTAGATAAACCTGGAGAAAAAATCCCTATTGATAGCGAACTTC
AAGTAAAAGGAAAGCAAATGCCTTATGTTAGTCGCGGTGGATTAAAGCTAGAAAAAGCATTGCAAGTATTTGATTTCGAA
GTGAAAGATAAACTTATGCTGGATATCGGAGCATCAACTGGTGGTTTTACAGACTGCGCTTTACAAAATGGGGCAAGACA
CTCTTATGCGCTCGATGTTGGCTATAATCAGCTTGCATGGAAACTGCGCAACGATGATCGCGTCACTGTGATGGAAAGAA
CTAATTTCCGTCATGTAACGCCAGCTGATTTTTCCGAAGGTTTAGCAGATTTTGCAACGATTGATGTATCCTTTATTTCA
CTCAAACTAATTTTACCAGTACTTAGAACTGTGCTTGTAACCGGTGGCGATGTGATGACACTTATCAAACCACAATTTGA
AGCAGGTCGAGAGCAAGTCGGTAAAAAAGGGATTATTCGTGATCCAGCAGTACATGAATCGGTAGTTGAACATATTGTTC
AATTTGCGCTCGATAATGGTTATGATTTGATGGGACTAGATTTTTCACCTATTACAGGTGGAGAAGGAAACATCGAATTT
ATCGCGCATCTTAAATGGACTGGTGGGGAAACTGGAACTAATCATTTGGAACCAAATGCGATTGCGAAACTTATCACAAA
AGCACATACAAAATTAGATAAATAA

Upstream 100 bases:

>100_bases
TATCCATAATTTTGGAATCATTTGGCATATCAACAACTGGAATAGTATTAAAAATAAAAGAAATGCTCGCACAAAGCGGG
AAGTTAAGGGCGAAGAGACT

Downstream 100 bases:

>100_bases
TGTATACCGGAAAGCAGTGATGTTTTCCGGTTTTTGCTTTTATCATGCTGTTTTGGCTCATTTTGCAATGTATTACCTAT
GTATAAAGTATTAAACAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MTIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPGEKIPIDSELQVKGKQMPYVSRGGLKLEKALQVFDFE
VKDKLMLDIGASTGGFTDCALQNGARHSYALDVGYNQLAWKLRNDDRVTVMERTNFRHVTPADFSEGLADFATIDVSFIS
LKLILPVLRTVLVTGGDVMTLIKPQFEAGREQVGKKGIIRDPAVHESVVEHIVQFALDNGYDLMGLDFSPITGGEGNIEF
IAHLKWTGGETGTNHLEPNAIAKLITKAHTKLDK

Sequences:

>Translated_274_residues
MTIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPGEKIPIDSELQVKGKQMPYVSRGGLKLEKALQVFDFE
VKDKLMLDIGASTGGFTDCALQNGARHSYALDVGYNQLAWKLRNDDRVTVMERTNFRHVTPADFSEGLADFATIDVSFIS
LKLILPVLRTVLVTGGDVMTLIKPQFEAGREQVGKKGIIRDPAVHESVVEHIVQFALDNGYDLMGLDFSPITGGEGNIEF
IAHLKWTGGETGTNHLEPNAIAKLITKAHTKLDK
>Mature_273_residues
TIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPGEKIPIDSELQVKGKQMPYVSRGGLKLEKALQVFDFEV
KDKLMLDIGASTGGFTDCALQNGARHSYALDVGYNQLAWKLRNDDRVTVMERTNFRHVTPADFSEGLADFATIDVSFISL
KLILPVLRTVLVTGGDVMTLIKPQFEAGREQVGKKGIIRDPAVHESVVEHIVQFALDNGYDLMGLDFSPITGGEGNIEFI
AHLKWTGGETGTNHLEPNAIAKLITKAHTKLDK

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30436; Mature: 30304

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPGEKIPIDSELQVKGKQM
CCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC
PYVSRGGLKLEKALQVFDFEVKDKLMLDIGASTGGFTDCALQNGARHSYALDVGYNQLAW
CEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCEEEE
KLRNDDRVTVMERTNFRHVTPADFSEGLADFATIDVSFISLKLILPVLRTVLVTGGDVMT
EECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LIKPQFEAGREQVGKKGIIRDPAVHESVVEHIVQFALDNGYDLMGLDFSPITGGEGNIEF
EECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE
IAHLKWTGGETGTNHLEPNAIAKLITKAHTKLDK
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPGEKIPIDSELQVKGKQM
CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC
PYVSRGGLKLEKALQVFDFEVKDKLMLDIGASTGGFTDCALQNGARHSYALDVGYNQLAW
CEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCEEEE
KLRNDDRVTVMERTNFRHVTPADFSEGLADFATIDVSFISLKLILPVLRTVLVTGGDVMT
EECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LIKPQFEAGREQVGKKGIIRDPAVHESVVEHIVQFALDNGYDLMGLDFSPITGGEGNIEF
EECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE
IAHLKWTGGETGTNHLEPNAIAKLITKAHTKLDK
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]