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The map label for this gene is ydgJ [H]

Identifier: 226223241

GI number: 226223241

Start: 656230

End: 656679

Strand: Direct

Name: ydgJ [H]

Synonym: Lm4b_00638

Alternate gene names: 226223241

Gene position: 656230-656679 (Clockwise)

Preceding gene: 226223238

Following gene: 226223242

Centisome position: 22.53

GC content: 37.33

Gene sequence:

>450_bases
ATGGGGGTGAAAACGCTGAAACCATGTACAGAACGATCTGAATTACTTTACCGGATGCACTTATTATCCAAGGAAATTAG
CCATGTATTTGAACAACAAACGAATATGAGTTTTACGAAAGTAGAGATTCTATTTCATATTCAACAAACACCAGGTCAAA
GTCAAAATCGACTACGAGAGAAGCTTTATATTGATTCGGCAAGTATTACCCGTCATTTGAAGCGAATGGAAGCGCAAGGG
CTGATTGTTCGGAAAAAGCAAGATGAAAACAAACGCTATACGTATTTATTTTTAACATCAGCGGGTGAGGCGGAATTAGC
CACTTTACTTTTGGAAAAAGAAAAATTTCAGAACGGGGCGCTAGAAGCCTTTTCAGAAGAAGAAGTTAGTGCGTTACTTA
AATCAGTCACAAAAATGATGAATAATGTAGAGAAAATGGAGGAGAAGTAA

Upstream 100 bases:

>100_bases
ATATTGCTTACAAAAAATTAGCCGCTAATGTTTGAGCAGATATTTTGTGCTTTTGGAAAGGAAGCGTATAATAGTTGATA
TATCATTTGACGTATCAACT

Downstream 100 bases:

>100_bases
AAATGAAAGCAGTTGTAATTGAAAATTATGGTGGCAAAGAAGAATTAAAAGAAAAAGAAGTAGCTATGCCAAAAGCGGGT
AAAAATCAAGTGATTGTCAA

Product: transcription regulator MarR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MGVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEILFHIQQTPGQSQNRLREKLYIDSASITRHLKRMEAQG
LIVRKKQDENKRYTYLFLTSAGEAELATLLLEKEKFQNGALEAFSEEEVSALLKSVTKMMNNVEKMEEK

Sequences:

>Translated_149_residues
MGVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEILFHIQQTPGQSQNRLREKLYIDSASITRHLKRMEAQG
LIVRKKQDENKRYTYLFLTSAGEAELATLLLEKEKFQNGALEAFSEEEVSALLKSVTKMMNNVEKMEEK
>Mature_148_residues
GVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEILFHIQQTPGQSQNRLREKLYIDSASITRHLKRMEAQGL
IVRKKQDENKRYTYLFLTSAGEAELATLLLEKEKFQNGALEAFSEEEVSALLKSVTKMMNNVEKMEEK

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17357; Mature: 17226

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEILFHIQQTPGQSQNRLRE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCHHHHHHH
KLYIDSASITRHLKRMEAQGLIVRKKQDENKRYTYLFLTSAGEAELATLLLEKEKFQNGA
HHHCCHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCH
LEAFSEEEVSALLKSVTKMMNNVEKMEEK
HHHCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEILFHIQQTPGQSQNRLRE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCHHHHHHH
KLYIDSASITRHLKRMEAQGLIVRKKQDENKRYTYLFLTSAGEAELATLLLEKEKFQNGA
HHHCCHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCH
LEAFSEEEVSALLKSVTKMMNNVEKMEEK
HHHCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]