Click here to switch to the map view.

The map label for this gene is yitU [H]

Identifier: 226222912

GI number: 226222912

Start: 306516

End: 307337

Strand: Reverse

Name: yitU [H]

Synonym: Lm4b_00304

Alternate gene names: 226222912

Gene position: 307337-306516 (Counterclockwise)

Preceding gene: 226222914

Following gene: 226222911

Centisome position: 10.55

GC content: 38.32

Gene sequence:

>822_bases
TTGACTAAAAAGTATTTGATTTGTTCCGATATCGATGGCACATTACTGCGCCAAGATCAAACTGTCTCTAAAAAAACGCG
TGATTTAATCCAAACCTTAGAAAAAGATGGCCATATTTTTTCTATTTCTACAGGACGGATGTATCGCTCTGCCCGTGAAG
TTGGCTTCCAAGTGAGTAATTCCGGTCATGTTATTGCCTCAAACGGATCCTACGCGGCTATTCGCGATGAACAACTGCTT
AAAACCACTTTAGAAGAGAAGGCAATTCGCTCCACTTACGATATTATGAGCGACTTCGATCTACCACTTTTTTTCTTCTC
TACCAATACACTTTTCTATACAAAAGAACCACCTGCTTTCTTCCAAAATCTTGCTGATAAAAGTCGCTTAGATACAGGAC
ACAATAGTTTTTCGCTCGTTTCTATTAATGAAAAAGGTGTTTTTGATGAAAACATGCATCAATTTTTAAATGCTATTGTC
GTTGCGGAAGATGATGCCTCAAAACTAACCGAAGTTCGCGCTGCTCTAAATGAAGCGAATGGTATTAGAGTCCTTTCTTC
ACACCATAATAATTTAGAAATACTTCCTGCTAATTCTGACAAAAAAACAGCCGTTGAAGCGCTTGGAAAGCATTACAATA
TTCCACGCGAAAGAATTATTACTTTTGGTGATGGCGAAAATGATATTGGCATGCTACAATATGCTGGAACCGGTGTTGCG
ATGGCAAATGCAAGCGATAATGTCAAAGCAGCAGCAGATCATCTTACTGACACGAATGAAGCAGATGGGGTTTACAAATT
TCTAAAAGAATTCATTTCATAA

Upstream 100 bases:

>100_bases
AAAAATTATTTTAGAACTCGATAAAAACTATTGTATCATAATAACTATTCCGATTCGCACATGGTATACTTAAGTTATTA
ACTAAAAAGGATGATTTTAT

Downstream 100 bases:

>100_bases
GAGAAGAGGAAAAGGGATGAAAAAAGGGATTCTAAACGTATTATTAGTTTTTGCTTTAATTGCGGGGCTTTCCGTACCAA
GTTCTATGCAAGTTGAAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTKKYLICSDIDGTLLRQDQTVSKKTRDLIQTLEKDGHIFSISTGRMYRSAREVGFQVSNSGHVIASNGSYAAIRDEQLL
KTTLEEKAIRSTYDIMSDFDLPLFFFSTNTLFYTKEPPAFFQNLADKSRLDTGHNSFSLVSINEKGVFDENMHQFLNAIV
VAEDDASKLTEVRAALNEANGIRVLSSHHNNLEILPANSDKKTAVEALGKHYNIPRERIITFGDGENDIGMLQYAGTGVA
MANASDNVKAAADHLTDTNEADGVYKFLKEFIS

Sequences:

>Translated_273_residues
MTKKYLICSDIDGTLLRQDQTVSKKTRDLIQTLEKDGHIFSISTGRMYRSAREVGFQVSNSGHVIASNGSYAAIRDEQLL
KTTLEEKAIRSTYDIMSDFDLPLFFFSTNTLFYTKEPPAFFQNLADKSRLDTGHNSFSLVSINEKGVFDENMHQFLNAIV
VAEDDASKLTEVRAALNEANGIRVLSSHHNNLEILPANSDKKTAVEALGKHYNIPRERIITFGDGENDIGMLQYAGTGVA
MANASDNVKAAADHLTDTNEADGVYKFLKEFIS
>Mature_272_residues
TKKYLICSDIDGTLLRQDQTVSKKTRDLIQTLEKDGHIFSISTGRMYRSAREVGFQVSNSGHVIASNGSYAAIRDEQLLK
TTLEEKAIRSTYDIMSDFDLPLFFFSTNTLFYTKEPPAFFQNLADKSRLDTGHNSFSLVSINEKGVFDENMHQFLNAIVV
AEDDASKLTEVRAALNEANGIRVLSSHHNNLEILPANSDKKTAVEALGKHYNIPRERIITFGDGENDIGMLQYAGTGVAM
ANASDNVKAAADHLTDTNEADGVYKFLKEFIS

Specific function: Unknown

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=279, Percent_Identity=27.5985663082437, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87081790, Length=266, Percent_Identity=25.5639097744361, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI48994981, Length=275, Percent_Identity=24.3636363636364, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF08282 Hydrolase_3 [H]

EC number: NA

Molecular weight: Translated: 30344; Mature: 30213

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKYLICSDIDGTLLRQDQTVSKKTRDLIQTLEKDGHIFSISTGRMYRSAREVGFQVSN
CCCCEEEEECCCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCEEECC
SGHVIASNGSYAAIRDEQLLKTTLEEKAIRSTYDIMSDFDLPLFFFSTNTLFYTKEPPAF
CCEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCHHH
FQNLADKSRLDTGHNSFSLVSINEKGVFDENMHQFLNAIVVAEDDASKLTEVRAALNEAN
HHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCC
GIRVLSSHHNNLEILPANSDKKTAVEALGKHYNIPRERIITFGDGENDIGMLQYAGTGVA
CEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHEEEECCCCCCCEEEEECCCCEE
MANASDNVKAAADHLTDTNEADGVYKFLKEFIS
EECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHC
>Mature Secondary Structure 
TKKYLICSDIDGTLLRQDQTVSKKTRDLIQTLEKDGHIFSISTGRMYRSAREVGFQVSN
CCCEEEEECCCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCEEECC
SGHVIASNGSYAAIRDEQLLKTTLEEKAIRSTYDIMSDFDLPLFFFSTNTLFYTKEPPAF
CCEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCHHH
FQNLADKSRLDTGHNSFSLVSINEKGVFDENMHQFLNAIVVAEDDASKLTEVRAALNEAN
HHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCC
GIRVLSSHHNNLEILPANSDKKTAVEALGKHYNIPRERIITFGDGENDIGMLQYAGTGVA
CEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHEEEECCCCCCCEEEEECCCCEE
MANASDNVKAAADHLTDTNEADGVYKFLKEFIS
EECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9025291; 9384377 [H]