BacMap

Definition	Listeria monocytogenes Clip81459, complete genome.
Accession	NC_012488
Length	2,912,690

Click here to switch to the map view.

The map label for this gene is yybJ [H]

Identifier: 226222670

GI number: 226222670

Start: 34803

End: 35387

Strand: Reverse

Name: yybJ [H]

Synonym: Lm4b_00033

Alternate gene names: 226222670

Gene position: 35387-34803 (Counterclockwise)

Preceding gene: 226222671

Following gene: 226222669

Centisome position: 1.21

GC content: 33.16

Gene sequence:

>585_bases
GTGCTTACTAATATTAATTATTCTTTTGAGCCTGGGAAAATCTACGGAGTTTTCGGAAAAAATGGATCTGGAAAAACAAT
GTTACTTAGATCGCTTGCTGGCTTAATCATACCAACAAGTGGCAAGATATTCATTGATAATAAAGAACTTCATCATGATA
TTTCTTTTCCGCCAAGTATGGGCATTATTATCGAAAATATGGAATTACTTCCCCAATTTGATGCGCGGACAAATTTAAAA
ATATTATCTAAAATTAAAAATATTGCAAGCGATGAAGATATTGATAATGCCATTGATAGAGTAGGATTATCTCCACATAT
TGATAAAAAAGTTAAAAAATATTCGCTTGGAATGAAGCAAAGACTTAATATTGCACAGGCCGTTTTTGAAAAACCCGCTG
TCATCTTGCTTGATGAACCCACAAATGCGATAGATGATCAAGGTATTGAACTAATTAACCAATTACTTTTAGAAGAAAAG
AAACGCGGAGCCACTATTATTATTGCAAGTCATCATAAAGAAGACATAGAACCACTTTGTGATATGAGTATCCGAATGGA
CCAAGGGAAAATTATCCATGACTAA

Upstream 100 bases:

>100_bases
TAGTCGCTATTAAAAAATTTAAAACAACAGACATTTTATGATAACGGAGGATTTTTATGATTAAAATTGTTAATTTGCAA
AAAAAATCAAGAGGACGGAA

Downstream 100 bases:

>100_bases
GACCAAATTCGTTATTTTCATAGCACTGACAGTCATTACACTGCTTCTATTCCTCGTTCCTAAAGGTATTCAATATCTCA
AAAGCCAAAATCCTGAGCTA

Product: ABC transporter ATP-binding protein

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MLTNINYSFEPGKIYGVFGKNGSGKTMLLRSLAGLIIPTSGKIFIDNKELHHDISFPPSMGIIIENMELLPQFDARTNLK
ILSKIKNIASDEDIDNAIDRVGLSPHIDKKVKKYSLGMKQRLNIAQAVFEKPAVILLDEPTNAIDDQGIELINQLLLEEK
KRGATIIIASHHKEDIEPLCDMSIRMDQGKIIHD

Sequences:

>Translated_194_residues
MLTNINYSFEPGKIYGVFGKNGSGKTMLLRSLAGLIIPTSGKIFIDNKELHHDISFPPSMGIIIENMELLPQFDARTNLK
ILSKIKNIASDEDIDNAIDRVGLSPHIDKKVKKYSLGMKQRLNIAQAVFEKPAVILLDEPTNAIDDQGIELINQLLLEEK
KRGATIIIASHHKEDIEPLCDMSIRMDQGKIIHD
>Mature_194_residues
MLTNINYSFEPGKIYGVFGKNGSGKTMLLRSLAGLIIPTSGKIFIDNKELHHDISFPPSMGIIIENMELLPQFDARTNLK
ILSKIKNIASDEDIDNAIDRVGLSPHIDKKVKKYSLGMKQRLNIAQAVFEKPAVILLDEPTNAIDDQGIELINQLLLEEK
KRGATIIIASHHKEDIEPLCDMSIRMDQGKIIHD

Specific function: Part Of The Binding-Protein-Dependent Transport System Alsbac For D-Allose. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI30795238, Length=194, Percent_Identity=30.4123711340206, Blast_Score=94, Evalue=7e-20,
Organism=Homo sapiens, GI27881501, Length=194, Percent_Identity=30.4123711340206, Blast_Score=94, Evalue=7e-20,
Organism=Homo sapiens, GI116734710, Length=196, Percent_Identity=30.1020408163265, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI45446740, Length=185, Percent_Identity=29.1891891891892, Blast_Score=93, Evalue=1e-19,
Organism=Homo sapiens, GI47078218, Length=185, Percent_Identity=29.1891891891892, Blast_Score=93, Evalue=1e-19,
Organism=Homo sapiens, GI105990541, Length=180, Percent_Identity=30.5555555555556, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI150417984, Length=190, Percent_Identity=29.4736842105263, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI27262624, Length=196, Percent_Identity=29.0816326530612, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI27262626, Length=196, Percent_Identity=29.0816326530612, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI31657092, Length=197, Percent_Identity=27.9187817258883, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI21536376, Length=190, Percent_Identity=28.4210526315789, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI153792144, Length=198, Percent_Identity=24.2424242424242, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI27477115, Length=194, Percent_Identity=24.2268041237113, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI6005701, Length=194, Percent_Identity=24.2268041237113, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI27436953, Length=195, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI21729873, Length=211, Percent_Identity=27.9620853080569, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI15149474, Length=211, Percent_Identity=27.9620853080569, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI156105685, Length=184, Percent_Identity=27.7173913043478, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI62526033, Length=185, Percent_Identity=27.5675675675676, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI89111135, Length=205, Percent_Identity=24.8780487804878, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI148612844, Length=205, Percent_Identity=28.780487804878, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI255708477, Length=205, Percent_Identity=28.780487804878, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI10947137, Length=208, Percent_Identity=25.9615384615385, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI27881506, Length=208, Percent_Identity=25.9615384615385, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI73747915, Length=189, Percent_Identity=25.3968253968254, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI11967969, Length=185, Percent_Identity=24.8648648648649, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI42741659, Length=203, Percent_Identity=25.1231527093596, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI21536378, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1790525, Length=201, Percent_Identity=29.8507462686567, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1786398, Length=200, Percent_Identity=30, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789873, Length=197, Percent_Identity=31.4720812182741, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1789672, Length=200, Percent_Identity=27.5, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788225, Length=214, Percent_Identity=30.8411214953271, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1786872, Length=185, Percent_Identity=30.2702702702703, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87081782, Length=197, Percent_Identity=25.8883248730964, Blast_Score=84, Evalue=4e-18,
Organism=Escherichia coli, GI1787370, Length=187, Percent_Identity=28.3422459893048, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1790467, Length=196, Percent_Identity=29.0816326530612, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI48994943, Length=194, Percent_Identity=26.8041237113402, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786703, Length=200, Percent_Identity=26.5, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1787547, Length=205, Percent_Identity=29.2682926829268, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1786345, Length=206, Percent_Identity=27.6699029126214, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI48995001, Length=200, Percent_Identity=23.5, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1788210, Length=200, Percent_Identity=25.5, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788897, Length=205, Percent_Identity=25.3658536585366, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=27.5, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081709, Length=197, Percent_Identity=26.9035532994924, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1787089, Length=205, Percent_Identity=27.3170731707317, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI87081791, Length=197, Percent_Identity=23.8578680203046, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1790190, Length=203, Percent_Identity=26.6009852216749, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786563, Length=189, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788450, Length=205, Percent_Identity=24.8780487804878, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1786803, Length=203, Percent_Identity=25.615763546798, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787029, Length=202, Percent_Identity=26.2376237623762, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786319, Length=184, Percent_Identity=25.5434782608696, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790739, Length=206, Percent_Identity=24.2718446601942, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787712, Length=195, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788761, Length=200, Percent_Identity=27, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1789032, Length=202, Percent_Identity=25.2475247524752, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1788165, Length=175, Percent_Identity=28, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1788472, Length=209, Percent_Identity=25.3588516746411, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787164, Length=195, Percent_Identity=26.1538461538462, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789864, Length=213, Percent_Identity=24.8826291079812, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787105, Length=203, Percent_Identity=26.6009852216749, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1788053, Length=182, Percent_Identity=23.0769230769231, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787758, Length=203, Percent_Identity=27.0935960591133, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI2367384, Length=233, Percent_Identity=24.4635193133047, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1787041, Length=182, Percent_Identity=30.2197802197802, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788506, Length=210, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1790162, Length=208, Percent_Identity=26.4423076923077, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786253, Length=203, Percent_Identity=23.6453201970443, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI87082267, Length=137, Percent_Identity=27.007299270073, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786698, Length=187, Percent_Identity=25.668449197861, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI48994883, Length=221, Percent_Identity=24.8868778280543, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=201, Percent_Identity=31.3432835820896, Blast_Score=98, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17510237, Length=180, Percent_Identity=30.5555555555556, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17565586, Length=196, Percent_Identity=25.5102040816327, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71983523, Length=189, Percent_Identity=28.042328042328, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=189, Percent_Identity=28.042328042328, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=189, Percent_Identity=28.042328042328, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565938, Length=184, Percent_Identity=27.7173913043478, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=208, Percent_Identity=27.4038461538462, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17511077, Length=205, Percent_Identity=26.3414634146341, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569081, Length=151, Percent_Identity=33.112582781457, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=205, Percent_Identity=25.8536585365854, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=204, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=204, Percent_Identity=30.3921568627451, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=204, Percent_Identity=27.4509803921569, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=201, Percent_Identity=25.3731343283582, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=188, Percent_Identity=27.1276595744681, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=200, Percent_Identity=24, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17543740, Length=182, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6321752, Length=214, Percent_Identity=26.6355140186916, Blast_Score=67, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221500365, Length=194, Percent_Identity=27.319587628866, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI116007184, Length=194, Percent_Identity=27.319587628866, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24643674, Length=179, Percent_Identity=29.608938547486, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI221512771, Length=192, Percent_Identity=27.6041666666667, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24666092, Length=195, Percent_Identity=24.6153846153846, Blast_Score=77, Evalue=5e-15,
Organism=Drosophila melanogaster, GI28574150, Length=192, Percent_Identity=27.0833333333333, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI116007328, Length=192, Percent_Identity=27.0833333333333, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24648314, Length=184, Percent_Identity=27.7173913043478, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573573, Length=196, Percent_Identity=28.0612244897959, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28573571, Length=196, Percent_Identity=28.0612244897959, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24659289, Length=189, Percent_Identity=28.042328042328, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85725262, Length=180, Percent_Identity=29.4444444444444, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI62484234, Length=198, Percent_Identity=25.7575757575758, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28574533, Length=180, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17136662, Length=189, Percent_Identity=25.3968253968254, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI161076682, Length=180, Percent_Identity=26.1111111111111, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI161076684, Length=180, Percent_Identity=26.1111111111111, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24581617, Length=180, Percent_Identity=26.1111111111111, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24581615, Length=180, Percent_Identity=26.1111111111111, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24648279, Length=198, Percent_Identity=28.7878787878788, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24666836, Length=198, Percent_Identity=28.2828282828283, Blast_Score=63, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 21685; Mature: 21685

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTNINYSFEPGKIYGVFGKNGSGKTMLLRSLAGLIIPTSGKIFIDNKELHHDISFPPSM
CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCEEECCCCEEEEECHHHCCCCCCCCCC
GIIIENMELLPQFDARTNLKILSKIKNIASDEDIDNAIDRVGLSPHIDKKVKKYSLGMKQ
CEEEECHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHH
RLNIAQAVFEKPAVILLDEPTNAIDDQGIELINQLLLEEKKRGATIIIASHHKEDIEPLC
HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
DMSIRMDQGKIIHD
CCEEECCCCCCCCC
>Mature Secondary Structure
MLTNINYSFEPGKIYGVFGKNGSGKTMLLRSLAGLIIPTSGKIFIDNKELHHDISFPPSM
CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCEEECCCCEEEEECHHHCCCCCCCCCC
GIIIENMELLPQFDARTNLKILSKIKNIASDEDIDNAIDRVGLSPHIDKKVKKYSLGMKQ
CEEEECHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHH
RLNIAQAVFEKPAVILLDEPTNAIDDQGIELINQLLLEEKKRGATIIIASHHKEDIEPLC
HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
DMSIRMDQGKIIHD
CCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1938973; 7584024; 9384377 [H]