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The map label for this gene is licR [H]

Identifier: 225861851

GI number: 225861851

Start: 1890757

End: 1892430

Strand: Reverse

Name: licR [H]

Synonym: SPT_2027

Alternate gene names: 225861851

Gene position: 1892430-1890757 (Counterclockwise)

Preceding gene: 225861852

Following gene: 225861850

Centisome position: 89.6

GC content: 33.03

Gene sequence:

>1674_bases
ATGGTACTGGATAAGGCAAGTTGTGATTTACTTCAATATTTGATGGATCAAGAAACGTCCAAAACGATTATGGCGATTTC
GAAAGATTTGAAAGAGTCAAGAAGGAAAATTTATTATCACATTGACAAAATCAATGCTGCTCTGGGTGACGAGGCGCTTC
ACATCATTAGTATTCCACGAATTGGTATTCACTTAACGGAAGAGCAGAGAGATGCTTGTTGTAAACTATTATCGGAAGTA
GATTCGTACGATTATATCATGAGTGCGCATGAACGTATGATGATAATGTTATTATGGATAGGTATTTCTAAAGAACGTAT
TACGATTGAAAAATTGATAGAGTTAACAGAGGTATCTAGGAATACTGTTCTCAATGATTTGAATAGTATTCGTTATCAAC
TAACTTTGGAACAATATCAGGTGACCTTGCAAGTGAGCAAGTCACAGGGATACCACCTTCATGCCCACCCTCTTAATAAA
ATTCAGTATCTTCAATCGCTTCTATATCATATTTTTATGGAAGAAAATGCCACTTTTGTATCTATTTTAGAAGATAAGAT
GAAAGAGAGGTTAGATGATGAGTGTTTGCTTTCTGTTGAAATGAACCAATTTTTTAAGGAACAGGTTCCTTTAGTTGAAC
AAGATTTAGGGAAGAAAATAAACCATCATGAAATAACTTTTATGTTGCAGGTTCTACCTTATTTGCTGTTAAGCTGTCAT
AATGTTGAACAGTATCAAGAAAGACATCAGGATATAGAGAAAGAATTTTCTTTGATAAGAAAAAGAATAGAGTATCAGGT
GTCTAAGAAATTAGGAGAACGGTTGTTTCAAAAGTTTGAAATTTCTTTGTCAGGACTTGAAGTTTCTCTTGTAGCTGTTC
TCCTCCTCTCCTATCGTAAAGATTTGGATATTCATGCAGAAAGTGATGATTTTCGGCAATTAAAACTTGCTTTAGAAGAA
TTTATCTGGTATTTTGAATCACAAATCCGAATGGAGATTGAGAACAAGGATGATTTGTTACGAAATTTGATGATCCACTG
TAAAGCCTTGTTATTTAGAAAGACTTACGGTATTTTTTCTAAAAATCCTCTAACAAAACAAATTCGATCCAAGTATGGAG
AATTATTTTTAGTCACTAGAAAATCTGCGGAAATTTTAGAAGGAGCATGGTTTATTCGGCTAACAGACGATGATATTGCC
TATTTGACGATTCATATTGGAGGATTTTTAAAATATACACCATCGTCTCAAAAAAATATGAAAAAAGTTTATCTCGTTTG
TGATGAAGGTGTTGCGGTTTCGAGACTTTTGCTGAAACAATGCAAACTTTATTTTCCAAATGAGCAAATTGACACTGTAT
TTACAACAGAACAATTTAAGAGTGTGGAAGATATTGCACAAGTTGATGTAGTGATTACTACTAATGATGATTTGGATAGC
AGATTTCCGATTTTAAGGGTTAATCCTATCCTTGAAGCAGAAGATATTTTGAAAATGCTAGACTATCTTAAACACAATAT
ATTTCGTAATAAGAGCAAAAGTTTCAGTGAAAATCTTTCTAGTCTTATTTCGTCTTATATTGTAGACAGCAAGTTGGCTA
GTAAGTTCCAAGAAGAGGTTCAAACACTTATAAATCAAGAAATAGTAGTTCAAGCTTTTTTGGAAGATATTTGA

Upstream 100 bases:

>100_bases
AGTAATTTTGAAAGATTTTTTAGAAATAGCGCTTGATATATATATATGGTAAAATAAAAAGAATTGCTGTGATATCAATA
GATTTGGGGGATTTTTTAAT

Downstream 100 bases:

>100_bases
AGGACAGTCCAATGATGAACACAAACCTGTGTTTTTCTTGGTCTTTTTTAGTGTTTTGAAGGGTGGTATACTAATCTCAA
AGATAACAATTATATCCAAA

Product: transcriptional regulator, BglG family

Products: NA

Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALGDEALHIISIPRIGIHLTEEQRDACCKLLSEV
DSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSRNTVLNDLNSIRYQLTLEQYQVTLQVSKSQGYHLHAHPLNK
IQYLQSLLYHIFMEENATFVSILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH
NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRKDLDIHAESDDFRQLKLALEE
FIWYFESQIRMEIENKDDLLRNLMIHCKALLFRKTYGIFSKNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIA
YLTIHIGGFLKYTPSSQKNMKKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS
RFPILRVNPILEAEDILKMLDYLKHNIFRNKSKSFSENLSSLISSYIVDSKLASKFQEEVQTLINQEIVVQAFLEDI

Sequences:

>Translated_557_residues
MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALGDEALHIISIPRIGIHLTEEQRDACCKLLSEV
DSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSRNTVLNDLNSIRYQLTLEQYQVTLQVSKSQGYHLHAHPLNK
IQYLQSLLYHIFMEENATFVSILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH
NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRKDLDIHAESDDFRQLKLALEE
FIWYFESQIRMEIENKDDLLRNLMIHCKALLFRKTYGIFSKNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIA
YLTIHIGGFLKYTPSSQKNMKKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS
RFPILRVNPILEAEDILKMLDYLKHNIFRNKSKSFSENLSSLISSYIVDSKLASKFQEEVQTLINQEIVVQAFLEDI
>Mature_557_residues
MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALGDEALHIISIPRIGIHLTEEQRDACCKLLSEV
DSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSRNTVLNDLNSIRYQLTLEQYQVTLQVSKSQGYHLHAHPLNK
IQYLQSLLYHIFMEENATFVSILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH
NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRKDLDIHAESDDFRQLKLALEE
FIWYFESQIRMEIENKDDLLRNLMIHCKALLFRKTYGIFSKNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIA
YLTIHIGGFLKYTPSSQKNMKKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS
RFPILRVNPILEAEDILKMLDYLKHNIFRNKSKSFSENLSSLISSYIVDSKLASKFQEEVQTLINQEIVVQAFLEDI

Specific function: Positive regulator of the licABCH operon [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIB type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR007737
- InterPro:   IPR011608
- InterPro:   IPR016152
- InterPro:   IPR002178
- InterPro:   IPR013011
- InterPro:   IPR003501
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 65310; Mature: 65310

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: PS51099 PTS_EIIB_TYPE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALGDEALHIISIPR
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
IGIHLTEEQRDACCKLLSEVDSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSR
CCEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
NTVLNDLNSIRYQLTLEQYQVTLQVSKSQGYHLHAHPLNKIQYLQSLLYHIFMEENATFV
HHHHHHHHHHHEEEEEEHEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHH
SILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH
HHHHHHHHHCCCHHHEEEHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
DLDIHAESDDFRQLKLALEEFIWYFESQIRMEIENKDDLLRNLMIHCKALLFRKTYGIFS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC
KNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIAYLTIHIGGFLKYTPSSQKNM
CCCHHHHHHHCCCCEEEEEECCHHHHCCEEEEEECCCCEEEEEEEECCEEEECCCCCCCC
KKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS
EEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHEEEEEECCCCCCC
RFPILRVNPILEAEDILKMLDYLKHNIFRNKSKSFSENLSSLISSYIVDSKLASKFQEEV
CCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTLINQEIVVQAFLEDI
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVLDKASCDLLQYLMDQETSKTIMAISKDLKESRRKIYYHIDKINAALGDEALHIISIPR
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
IGIHLTEEQRDACCKLLSEVDSYDYIMSAHERMMIMLLWIGISKERITIEKLIELTEVSR
CCEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
NTVLNDLNSIRYQLTLEQYQVTLQVSKSQGYHLHAHPLNKIQYLQSLLYHIFMEENATFV
HHHHHHHHHHHEEEEEEHEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHH
SILEDKMKERLDDECLLSVEMNQFFKEQVPLVEQDLGKKINHHEITFMLQVLPYLLLSCH
HHHHHHHHHCCCHHHEEEHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
NVEQYQERHQDIEKEFSLIRKRIEYQVSKKLGERLFQKFEISLSGLEVSLVAVLLLSYRK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
DLDIHAESDDFRQLKLALEEFIWYFESQIRMEIENKDDLLRNLMIHCKALLFRKTYGIFS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC
KNPLTKQIRSKYGELFLVTRKSAEILEGAWFIRLTDDDIAYLTIHIGGFLKYTPSSQKNM
CCCHHHHHHHCCCCEEEEEECCHHHHCCEEEEEECCCCEEEEEEEECCEEEECCCCCCCC
KKVYLVCDEGVAVSRLLLKQCKLYFPNEQIDTVFTTEQFKSVEDIAQVDVVITTNDDLDS
EEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHEEEEEECCCCCCC
RFPILRVNPILEAEDILKMLDYLKHNIFRNKSKSFSENLSSLISSYIVDSKLASKFQEEV
CCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTLINQEIVVQAFLEDI
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8990303; 8969509; 9384377; 10438772 [H]