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The map label for this gene is rpe [H]

Identifier: 225861800

GI number: 225861800

Start: 1838006

End: 1838662

Strand: Reverse

Name: rpe [H]

Synonym: SPT_1962

Alternate gene names: 225861800

Gene position: 1838662-1838006 (Counterclockwise)

Preceding gene: 225861801

Following gene: 225861799

Centisome position: 87.05

GC content: 44.9

Gene sequence:

>657_bases
ATGTCTCAATACAAGATTGCTCCGTCAATTCTGGCAGCAGATTATGCCAACTTTGAACGTGAAATCAAACGTCTAGAAGC
AACTGGGGCAGAATATGCCCATATCGATATCATGGACAGTCATTTTGTACCGCAAATCAGTTTTGGTGCAGGTGTGGTCG
AGAGCCTTCGTCCTCATAGTAAGATGGTTTTCGATTGCCACTTGATGGTGTCAAACCCTGAGCATCATCTGGAAGATTTT
GCGCGTGCAGGTGCAGACATCATCAGTATCCATGTAGAAGCAACGCCTCATATTCATGGCGCCCTCCAAAAAATTCGTTC
ACTCGGAGTTAAGCCTTCAGTCGTTATCAATCCTGGCACACCAGTTGAAGCCATCAAGCACGTCCTTCATCTAGTTGACC
AAGTTTTAGTCATGACGGTTAATCCAGGTTTTGGTGGGCAAGCCTTTCTGCCAGAAACCATGGATAAGGTTCGTGAGTTG
GTTGCTCTTCGTCAGGAAAAAGGTTTAAACTTTGAAATCGAAGTGGATGGTGGGATTGATGACCAAACTATTGCTCAAGC
CAAAGAAGCTGGTGCGACTGTTTTTGTAGCAGGTTCCTATGTCTTTAAGGGAGAAGTCAATGAGCGAGTACAAACTCTCA
GAAAACAACTGGACTAG

Upstream 100 bases:

>100_bases
TTCCGTTTTGACAACTACCTGCAATTCCTCAGCGAAATTGAAAATCGTAGAGAAACCTATAAAAAAGTCAGCAAAAAAAT
TCCAAAATAAGGAGAAACCT

Downstream 100 bases:

>100_bases
GGTTGCAGTTTTTGCAGGCGGAAACCGCGGTCATTATCGGACAGATTTTGATGCTTTTGTTGGGGTGGATCGAGGCTCGC
TCTGGGTCTTGGAAGAAGAC

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MSQYKIAPSILAADYANFEREIKRLEATGAEYAHIDIMDSHFVPQISFGAGVVESLRPHSKMVFDCHLMVSNPEHHLEDF
ARAGADIISIHVEATPHIHGALQKIRSLGVKPSVVINPGTPVEAIKHVLHLVDQVLVMTVNPGFGGQAFLPETMDKVREL
VALRQEKGLNFEIEVDGGIDDQTIAQAKEAGATVFVAGSYVFKGEVNERVQTLRKQLD

Sequences:

>Translated_218_residues
MSQYKIAPSILAADYANFEREIKRLEATGAEYAHIDIMDSHFVPQISFGAGVVESLRPHSKMVFDCHLMVSNPEHHLEDF
ARAGADIISIHVEATPHIHGALQKIRSLGVKPSVVINPGTPVEAIKHVLHLVDQVLVMTVNPGFGGQAFLPETMDKVREL
VALRQEKGLNFEIEVDGGIDDQTIAQAKEAGATVFVAGSYVFKGEVNERVQTLRKQLD
>Mature_217_residues
SQYKIAPSILAADYANFEREIKRLEATGAEYAHIDIMDSHFVPQISFGAGVVESLRPHSKMVFDCHLMVSNPEHHLEDFA
RAGADIISIHVEATPHIHGALQKIRSLGVKPSVVINPGTPVEAIKHVLHLVDQVLVMTVNPGFGGQAFLPETMDKVRELV
ALRQEKGLNFEIEVDGGIDDQTIAQAKEAGATVFVAGSYVFKGEVNERVQTLRKQLD

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=218, Percent_Identity=42.2018348623853, Blast_Score=165, Evalue=2e-41,
Organism=Homo sapiens, GI219879828, Length=218, Percent_Identity=39.9082568807339, Blast_Score=152, Evalue=2e-37,
Organism=Homo sapiens, GI24307923, Length=157, Percent_Identity=36.3057324840764, Blast_Score=96, Evalue=3e-20,
Organism=Escherichia coli, GI1789788, Length=219, Percent_Identity=42.0091324200913, Blast_Score=183, Evalue=6e-48,
Organism=Escherichia coli, GI1790523, Length=199, Percent_Identity=42.2110552763819, Blast_Score=171, Evalue=3e-44,
Organism=Escherichia coli, GI1790754, Length=173, Percent_Identity=29.4797687861272, Blast_Score=89, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17552948, Length=204, Percent_Identity=44.6078431372549, Blast_Score=162, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6322341, Length=224, Percent_Identity=41.9642857142857, Blast_Score=168, Evalue=6e-43,
Organism=Drosophila melanogaster, GI24586301, Length=200, Percent_Identity=43, Blast_Score=162, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23944; Mature: 23813

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQYKIAPSILAADYANFEREIKRLEATGAEYAHIDIMDSHFVPQISFGAGVVESLRPHS
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEECCCHHHHHHCCCCC
KMVFDCHLMVSNPEHHLEDFARAGADIISIHVEATPHIHGALQKIRSLGVKPSVVINPGT
CEEEEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCC
PVEAIKHVLHLVDQVLVMTVNPGFGGQAFLPETMDKVRELVALRQEKGLNFEIEVDGGID
CHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
DQTIAQAKEAGATVFVAGSYVFKGEVNERVQTLRKQLD
HHHHHHHHHCCCEEEEECCEEEECCHHHHHHHHHHHCC
>Mature Secondary Structure 
SQYKIAPSILAADYANFEREIKRLEATGAEYAHIDIMDSHFVPQISFGAGVVESLRPHS
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEECCCHHHHHHCCCCC
KMVFDCHLMVSNPEHHLEDFARAGADIISIHVEATPHIHGALQKIRSLGVKPSVVINPGT
CEEEEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCC
PVEAIKHVLHLVDQVLVMTVNPGFGGQAFLPETMDKVRELVALRQEKGLNFEIEVDGGID
CHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
DQTIAQAKEAGATVFVAGSYVFKGEVNERVQTLRKQLD
HHHHHHHHHCCCEEEEECCEEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA