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The map label for this gene is rsmD [H]

Identifier: 225861787

GI number: 225861787

Start: 1827284

End: 1827823

Strand: Reverse

Name: rsmD [H]

Synonym: SPT_1949

Alternate gene names: 225861787

Gene position: 1827823-1827284 (Counterclockwise)

Preceding gene: 225861788

Following gene: 225861786

Centisome position: 86.54

GC content: 44.81

Gene sequence:

>540_bases
ATGAAAATCGTATCAGGAATCTATGGGGGACGTCCCCTCAAGACACTAGAAGGCAAGACGACAAGACCTACTTCGGATAA
GGTTAGGGGAGCCATTTTTAACATGATTGGTCCCTACTTTGAAGTGGGACGAGTCTTGGACCTTTATGCAGGTAGTGGTG
GTTTATCTATCGAAGCAGTATCGCGTGGCATGTCCAGTGCTGTTTTGGTGGAGCGAGACCGTAAGGCTCAGACCATCGTG
GCTGAAAATATCCAGATGACCAAGGAAGTTGGAAAATTTCAACTCCTCAAGATGGATGCAGAAAGGGCATTGGAACAGGT
ATCTGGGGAATTTGACCTCGTTTTCTTAGACCCTCCCTATGCCAAGGAACAAATCGTAGCAGATATTGAAAAAATGGCTG
AGAGAGAGCTTTTTTCTGAAGATGTTATGGTTGTGTGCGAGACGGATAAGGCCGTTGAACTTCCAGAAGAAATTGCCTGT
CTGGGTATCTGGAAGGAAAAGATTTATGGAATTAGTAAGGTGACAGTCTATGTCAGATAA

Upstream 100 bases:

>100_bases
CAAGAAGTCCGCGATACTTACGAAAATATTTTGTAGAGAATCGAACCGCAAGGTTCGGTTTTCTTTCTCTTTTTGTCTAT
AATTTGGTATAATAAACAGT

Downstream 100 bases:

>100_bases
GATTGGCTTATTCACAGGCTCATTTGATCCGATGACAAATGGGCATCTGGATATCATTGAACGGGCGAGCAGACTCTTTG
ATAAGCTCTATGTCGGTATT

Product: RNA methyltransferase, RsmD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGPYFEVGRVLDLYAGSGGLSIEAVSRGMSSAVLVERDRKAQTIV
AENIQMTKEVGKFQLLKMDAERALEQVSGEFDLVFLDPPYAKEQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIAC
LGIWKEKIYGISKVTVYVR

Sequences:

>Translated_179_residues
MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGPYFEVGRVLDLYAGSGGLSIEAVSRGMSSAVLVERDRKAQTIV
AENIQMTKEVGKFQLLKMDAERALEQVSGEFDLVFLDPPYAKEQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIAC
LGIWKEKIYGISKVTVYVR
>Mature_179_residues
MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGPYFEVGRVLDLYAGSGGLSIEAVSRGMSSAVLVERDRKAQTIV
AENIQMTKEVGKFQLLKMDAERALEQVSGEFDLVFLDPPYAKEQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIAC
LGIWKEKIYGISKVTVYVR

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=179, Percent_Identity=28.4916201117318, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 19886; Mature: 19886

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGPYFEVGRVLDLYAGSGGLSIEAV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHEEEECCCCCCHHHH
SRGMSSAVLVERDRKAQTIVAENIQMTKEVGKFQLLKMDAERALEQVSGEFDLVFLDPPY
HCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCEEEEEECCCC
AKEQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIWKEKIYGISKVTVYVR
CHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEC
>Mature Secondary Structure
MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGPYFEVGRVLDLYAGSGGLSIEAV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHEEEECCCCCCHHHH
SRGMSSAVLVERDRKAQTIVAENIQMTKEVGKFQLLKMDAERALEQVSGEFDLVFLDPPY
HCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCEEEEEECCCC
AKEQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIWKEKIYGISKVTVYVR
CHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]