BacMap

Definition	Streptococcus pneumoniae Taiwan19F-14, complete genome.
Accession	NC_012469
Length	2,112,148

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The map label for this gene is yybJ [H]

Identifier: 225861528

GI number: 225861528

Start: 1568846

End: 1569496

Strand: Reverse

Name: yybJ [H]

Synonym: SPT_1642

Alternate gene names: 225861528

Gene position: 1569496-1568846 (Counterclockwise)

Preceding gene: 225861529

Following gene: 225861527

Centisome position: 74.31

GC content: 32.87

Gene sequence:

>651_bases
ATGAAACTTGAAATTATAAATGGACAGAAAATTTATGGGAAAAGACCTATTTTAAATCAGTTGAATTTGGTGTTTCAATC
AGGAAAAATTTATGGACTTAAAGGTGATAATGGATCTGGCAAGACGGTTCTTTTAAAGGTACTTGCTGGTTATATTAAGC
TTGACAAAGGAAAAGTTCTTCAAGATGGTAAAGTTTACGGGATAAAAAATCATTATATTCAGGATGCAGGAATTTTAATT
GAAAAAGTCGAGTTTTTATCTCATTTATCCCTGAGAGAAAATTTGGAACTGTTAAGGTATTTTTCATCTAAAGTTACGGA
AAAAAGAATTGCCTATTGGATTCAATACTATGATTTACAGGAATTTGAAGACGTTGAATACCGGCATTTATCCTTGGGAA
CAAAGCAAAAAATGGCCTTGATTCAAGCCTTTATTTCCTCTCCTTCTATACTCTTTCTCGATGAACCTATGAATGCTTTG
GATGAGAAGAGTGTGAGGTTAACCAAACAGGTCATTTTATCTTACCTGAAAAAAGAAAATGGTCTGGTTATCCTGACGTC
GCACATATCAGAAGATATTTCAGACCTTTGTACAGATGTATTAGTTGTCGAAAATGGACATATACAATATGTAAAGGATA
TACAATCCTAG

Upstream 100 bases:

>100_bases
GATGATGGATCATATTGTAACAGTGTATTTACTACTCTTAAGCTTATTAGTTATGTTGATTGTTAGTCGCTTGGAAGAGA
AATTTAAGAAAGGATAAACG

Downstream 100 bases:

>100_bases
GAGATGGCTTATGGCACATCTAAAATCATTTATTACACGCTATTCCAAGGTTTATATTGGTTTAGTTCTGCTGATCTGGC
TGTCTTTCTTCTTTATCCCT

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSGKTVLLKVLAGYIKLDKGKVLQDGKVYGIKNHYIQDAGILI
EKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQEFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNAL
DEKSVRLTKQVILSYLKKENGLVILTSHISEDISDLCTDVLVVENGHIQYVKDIQS

Sequences:

>Translated_216_residues
MKLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSGKTVLLKVLAGYIKLDKGKVLQDGKVYGIKNHYIQDAGILI
EKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQEFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNAL
DEKSVRLTKQVILSYLKKENGLVILTSHISEDISDLCTDVLVVENGHIQYVKDIQS
>Mature_216_residues
MKLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSGKTVLLKVLAGYIKLDKGKVLQDGKVYGIKNHYIQDAGILI
EKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQEFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNAL
DEKSVRLTKQVILSYLKKENGLVILTSHISEDISDLCTDVLVVENGHIQYVKDIQS

Specific function: Part Of The Abc Transporter Complex Fbpabc Involved In Ferric Cations Import. Responsible For Energy Coupling To The Transport System (By Similarity). [C]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI45446740, Length=223, Percent_Identity=31.390134529148, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI47078218, Length=223, Percent_Identity=31.390134529148, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI30795238, Length=222, Percent_Identity=31.0810810810811, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI27881501, Length=222, Percent_Identity=31.0810810810811, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI21536376, Length=219, Percent_Identity=29.2237442922374, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI105990541, Length=212, Percent_Identity=29.7169811320755, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI153792144, Length=208, Percent_Identity=22.1153846153846, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI116734710, Length=215, Percent_Identity=27.906976744186, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI6005701, Length=201, Percent_Identity=24.8756218905473, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27477115, Length=208, Percent_Identity=23.5576923076923, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI27436953, Length=197, Percent_Identity=24.8730964467005, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI31657092, Length=203, Percent_Identity=26.1083743842365, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI150417984, Length=210, Percent_Identity=28.0952380952381, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI27262624, Length=202, Percent_Identity=23.7623762376238, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27262626, Length=202, Percent_Identity=23.7623762376238, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI89111135, Length=207, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI87081709, Length=217, Percent_Identity=27.1889400921659, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87081782, Length=201, Percent_Identity=30.8457711442786, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081791, Length=207, Percent_Identity=25.1207729468599, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=27.1889400921659, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787370, Length=208, Percent_Identity=25.4807692307692, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI48994943, Length=201, Percent_Identity=24.3781094527363, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787712, Length=213, Percent_Identity=24.8826291079812, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=27.5, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1790525, Length=210, Percent_Identity=25.7142857142857, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789593, Length=209, Percent_Identity=24.8803827751196, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786398, Length=210, Percent_Identity=29.0476190476191, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790467, Length=213, Percent_Identity=24.4131455399061, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1789864, Length=210, Percent_Identity=23.3333333333333, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48995001, Length=198, Percent_Identity=26.7676767676768, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789672, Length=169, Percent_Identity=26.6272189349112, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788450, Length=214, Percent_Identity=24.2990654205607, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790190, Length=202, Percent_Identity=25.2475247524752, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1786253, Length=194, Percent_Identity=23.1958762886598, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=27.1844660194175, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082268, Length=204, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082064, Length=184, Percent_Identity=28.2608695652174, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787089, Length=215, Percent_Identity=26.046511627907, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788472, Length=201, Percent_Identity=29.3532338308458, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1788210, Length=195, Percent_Identity=25.6410256410256, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI87082267, Length=203, Percent_Identity=24.6305418719212, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1790544, Length=223, Percent_Identity=23.3183856502242, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787182, Length=228, Percent_Identity=25, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787041, Length=205, Percent_Identity=27.3170731707317, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=198, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=206, Percent_Identity=25.2427184466019, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=225, Percent_Identity=26.2222222222222, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=212, Percent_Identity=27.3584905660377, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=200, Percent_Identity=25.5, Blast_Score=63, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=200, Percent_Identity=25.5, Blast_Score=63, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI71983510, Length=200, Percent_Identity=25.5, Blast_Score=63, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6325030, Length=214, Percent_Identity=29.9065420560748, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6324498, Length=227, Percent_Identity=29.0748898678414, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007328, Length=220, Percent_Identity=26.8181818181818, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28574150, Length=220, Percent_Identity=26.8181818181818, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI116007184, Length=217, Percent_Identity=30.4147465437788, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI221500365, Length=217, Percent_Identity=30.4147465437788, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24666092, Length=209, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24650855, Length=212, Percent_Identity=26.8867924528302, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24650853, Length=212, Percent_Identity=26.8867924528302, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=27.6995305164319, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI281362751, Length=212, Percent_Identity=26.8867924528302, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221512771, Length=216, Percent_Identity=24.0740740740741, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24582014, Length=203, Percent_Identity=27.0935960591133, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582012, Length=203, Percent_Identity=27.0935960591133, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581191, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24581189, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24581193, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24581195, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24581387, Length=210, Percent_Identity=26.1904761904762, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581383, Length=210, Percent_Identity=26.1904761904762, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581385, Length=210, Percent_Identity=26.1904761904762, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28571209, Length=208, Percent_Identity=24.0384615384615, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI85724858, Length=205, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI85724856, Length=205, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580547, Length=205, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580551, Length=205, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580549, Length=205, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580545, Length=205, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 24683; Mature: 24683

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSGKTVLLKVLAGYIKLDKGKVL
CEEEEECCCEECCCCCHHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
QDGKVYGIKNHYIQDAGILIEKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQ
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNALDEKSVRLTKQVILSYLKKEN
HHCCCCCCEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
GLVILTSHISEDISDLCTDVLVVENGHIQYVKDIQS
CEEEEEHHHHHHHHHHHHHEEEEECCCEEEHHCCCC
>Mature Secondary Structure
MKLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSGKTVLLKVLAGYIKLDKGKVL
CEEEEECCCEECCCCCHHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
QDGKVYGIKNHYIQDAGILIEKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQ
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNALDEKSVRLTKQVILSYLKKEN
HHCCCCCCEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
GLVILTSHISEDISDLCTDVLVVENGHIQYVKDIQS
CEEEEEHHHHHHHHHHHHHEEEEECCCEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938973; 7584024; 9384377 [H]