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The map label for this gene is aliB [H]

Identifier: 225861359

GI number: 225861359

Start: 1394045

End: 1396006

Strand: Reverse

Name: aliB [H]

Synonym: SPT_1466

Alternate gene names: 225861359

Gene position: 1396006-1394045 (Counterclockwise)

Preceding gene: 225861360

Following gene: 225861358

Centisome position: 66.09

GC content: 39.7

Gene sequence:

>1962_bases
ATGAAAAAGTCTAAGAGCAAATATCTAACCTTGGCAGGTTTTGTCCTGGGTACAGGAGTTTTATTGAGCGCGTGTGGAAA
TTCTAGCACTGCATCAAAAACCTATAACTATGTTTATTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGCG
CAACAACCAATGATATTGTGACCAATCTGGTAGATGGTCTCATGGAAAATGACCAATATGGGAACTATGTGCCATCCTTG
GCAGAAGATTGGACTGTTTCTCAGGATGGTTTGACCTATACCTACAAACTTCGTAAGGATGCCAAGTGGTTTACTTCTGA
GGGAGAAGAATATGCACCTGTAACTGCCCAGGATTTTGTGACAGGATTGCAATATGCAGCTGATAAAAAATCAGAAGCCT
TGTATCTAGTGCAGGACTCTGTTGCAGGTTTGGATGACTATATCACTGGTAAAACAAGCGACTTTTCAACTGTCGGTATC
AAGGCTCTTGATGATCAAACCGTTCAATACACCTTGGCTCGACCAGAACCTTACTGGAACTCAAAAACAACCTCAACCAT
TCTTTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGCAAGGTAGACCCTGCTAATATTTTGTACA
GTGGACCTTTCTTGATGAAAGCTTTTGTTTCAAAATCTGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGACGATGTGAAATTGACCTACTATGATGGTAGTGACCAAGATGCTCTTGTTCGTAACTTTACAGACGG
AGCCTATAGCTATGCCCGTCTCTATCCGAATAGTTCAAGTTTTGAAGGGATTAAAGAAAAATACAAAGATGATATCATCT
ACAGTATGCAGGATGCTACGTCTTATTACTGGAATTTTAACCTAGATAGACAAGCTTATAAATTTACTTCTAAGACGACC
GACATTGAAAAGAAATCAACTCAGGAAGCAGTTCTTAATAAAAACTTCCGTCAAGCTATTAACTTTGCCTATGATCGTAC
CTCCTATGGGGCTCAAACTCAGGGAGAAGACGGAGCGACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAACCTTTGTAA
GTATCAAAGGAAAAGATTTTGGTGAAGTAGTAGCCTCTAAGATGGTCAATAATTATGGTAAGGAATGGCAAGGCATCAAC
TTTGCGGATGGTCAAGACCCTTACTACAATCCTGAGAAAGCCAAGGCTAAATTTGCTGAGGCCAAGAAAGAGCTAGAAGC
TAAGGGAGTTCAATTCCCTATTCATTTGGATGCGACAGTTGACCAAGCTTCTAAGAAGGGGATTCAAGAAGTAAGCTCCA
TGAAGCAATCTATTGAAGCAGCTTTAGGTACGGAGAACGTCGTTATTGATATCCAACAGTTATCAACAGAGGACTATGAT
AACTCAAGTTACCTTGCTCAGACTGCTATTCAGAAAGACTACGACCTTTACAATGGTGGTTGGAGTCCTGACTACTTAGA
TCCATCAACCTATCTTGATATCTTTAGTGTCAAGAATGGTGGGGTTCTACAAAATCTTGGACTCGACCCTGGTGAAGCCA
ATGACAAGGCTAAGGCAGTTGGACTTGACACTTATACTCAAATGTTGGAAGAGGCTAATAAGGAGCAAGACCCAGCCAAA
CGTTATGAGAAATATGCTGATATTCAAGCATGGTTGATAGATAGTTCTCTAGCGATTCCAAATGTTTCATTAGGTGGAAC
GCCTAGCTTGAGAAAAACAGTTCCTTTCTCAGCACCTTATTCATTGGCTGGTAATAAAGGGGTTGAATCATATAAATACC
TCAAAGTACAAGATAAGATTGTCACAACAGACGAATATGCAAAAGCCAGAGAAAAATGGTTGAAAGAAAAAGAAGAATCC
AATAAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Upstream 100 bases:

>100_bases
AAATAGAAAATGAGTTTTTTGATTTTTTGGAAAAAACAATTGACTAAACAAACCAAGAGTTGTATAATAAAACAAATATT
TAAAGCAGGAGGTTCTGGAA

Downstream 100 bases:

>100_bases
AATCTAATTGTAGATAAGTTTGTGTAAGAAGTCTTTGTGCTTAAAAACGCATAATATCAGGTATATAAAATCCTAGATGT
TATGCGTTTTGTTATAGGAA

Product: oligopeptide-binding protein AliB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 653

Protein sequence:

>653_residues
MKKSKSKYLTLAGFVLGTGVLLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGI
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSFEGIKEKYKDDIIYSMQDATSYYWNFNLDRQAYKFTSKTT
DIEKKSTQEAVLNKNFRQAINFAYDRTSYGAQTQGEDGATKILRNLVVPPTFVSIKGKDFGEVVASKMVNNYGKEWQGIN
FADGQDPYYNPEKAKAKFAEAKKELEAKGVQFPIHLDATVDQASKKGIQEVSSMKQSIEAALGTENVVIDIQQLSTEDYD
NSSYLAQTAIQKDYDLYNGGWSPDYLDPSTYLDIFSVKNGGVLQNLGLDPGEANDKAKAVGLDTYTQMLEEANKEQDPAK
RYEKYADIQAWLIDSSLAIPNVSLGGTPSLRKTVPFSAPYSLAGNKGVESYKYLKVQDKIVTTDEYAKAREKWLKEKEES
NKKAQEELAKHVK

Sequences:

>Translated_653_residues
MKKSKSKYLTLAGFVLGTGVLLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGI
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSFEGIKEKYKDDIIYSMQDATSYYWNFNLDRQAYKFTSKTT
DIEKKSTQEAVLNKNFRQAINFAYDRTSYGAQTQGEDGATKILRNLVVPPTFVSIKGKDFGEVVASKMVNNYGKEWQGIN
FADGQDPYYNPEKAKAKFAEAKKELEAKGVQFPIHLDATVDQASKKGIQEVSSMKQSIEAALGTENVVIDIQQLSTEDYD
NSSYLAQTAIQKDYDLYNGGWSPDYLDPSTYLDIFSVKNGGVLQNLGLDPGEANDKAKAVGLDTYTQMLEEANKEQDPAK
RYEKYADIQAWLIDSSLAIPNVSLGGTPSLRKTVPFSAPYSLAGNKGVESYKYLKVQDKIVTTDEYAKAREKWLKEKEES
NKKAQEELAKHVK
>Mature_653_residues
MKKSKSKYLTLAGFVLGTGVLLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGI
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSFEGIKEKYKDDIIYSMQDATSYYWNFNLDRQAYKFTSKTT
DIEKKSTQEAVLNKNFRQAINFAYDRTSYGAQTQGEDGATKILRNLVVPPTFVSIKGKDFGEVVASKMVNNYGKEWQGIN
FADGQDPYYNPEKAKAKFAEAKKELEAKGVQFPIHLDATVDQASKKGIQEVSSMKQSIEAALGTENVVIDIQQLSTEDYD
NSSYLAQTAIQKDYDLYNGGWSPDYLDPSTYLDIFSVKNGGVLQNLGLDPGEANDKAKAVGLDTYTQMLEEANKEQDPAK
RYEKYADIQAWLIDSSLAIPNVSLGGTPSLRKTVPFSAPYSLAGNKGVESYKYLKVQDKIVTTDEYAKAREKWLKEKEES
NKKAQEELAKHVK

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably an oligopeptide binding protein [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=226, Percent_Identity=33.1858407079646, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1787495, Length=327, Percent_Identity=27.5229357798165, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87081878, Length=302, Percent_Identity=27.1523178807947, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789966, Length=580, Percent_Identity=24.8275862068966, Blast_Score=82, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 73012; Mature: 73012

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSKSKYLTLAGFVLGTGVLLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIV
CCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCHHHHH
TNLVDGLMENDQYGNYVPSLAEDWTVSQDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFV
HHHHHHHHCCCCCCCCCCCHHCCCEECCCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHH
TGLQYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGIKALDDQTVQYTLARPEPYWN
HHHHHHCCCCCCEEEEEECCCCCCHHHCCCCCCCCCEECEEECCCCEEEEEEECCCCCCC
SKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
CCCCEEEEEECCHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCC
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSFEGIKEKYKDDIIYSMQDAT
CEEEEEEEEEEECCCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHEEEECCCC
SYYWNFNLDRQAYKFTSKTTDIEKKSTQEAVLNKNFRQAINFAYDRTSYGAQTQGEDGAT
EEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
KILRNLVVPPTFVSIKGKDFGEVVASKMVNNYGKEWQGINFADGQDPYYNPEKAKAKFAE
HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AKKELEAKGVQFPIHLDATVDQASKKGIQEVSSMKQSIEAALGTENVVIDIQQLSTEDYD
HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCCC
NSSYLAQTAIQKDYDLYNGGWSPDYLDPSTYLDIFSVKNGGVLQNLGLDPGEANDKAKAV
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCEEE
GLDTYTQMLEEANKEQDPAKRYEKYADIQAWLIDSSLAIPNVSLGGTPSLRKTVPFSAPY
CHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCC
SLAGNKGVESYKYLKVQDKIVTTDEYAKAREKWLKEKEESNKKAQEELAKHVK
CCCCCCCCCCEEEEEEECEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKSKSKYLTLAGFVLGTGVLLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIV
CCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCHHHHH
TNLVDGLMENDQYGNYVPSLAEDWTVSQDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFV
HHHHHHHHCCCCCCCCCCCHHCCCEECCCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHH
TGLQYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGIKALDDQTVQYTLARPEPYWN
HHHHHHCCCCCCEEEEEECCCCCCHHHCCCCCCCCCEECEEECCCCEEEEEEECCCCCCC
SKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
CCCCEEEEEECCHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCC
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSFEGIKEKYKDDIIYSMQDAT
CEEEEEEEEEEECCCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHEEEECCCC
SYYWNFNLDRQAYKFTSKTTDIEKKSTQEAVLNKNFRQAINFAYDRTSYGAQTQGEDGAT
EEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
KILRNLVVPPTFVSIKGKDFGEVVASKMVNNYGKEWQGINFADGQDPYYNPEKAKAKFAE
HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AKKELEAKGVQFPIHLDATVDQASKKGIQEVSSMKQSIEAALGTENVVIDIQQLSTEDYD
HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCCC
NSSYLAQTAIQKDYDLYNGGWSPDYLDPSTYLDIFSVKNGGVLQNLGLDPGEANDKAKAV
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCEEE
GLDTYTQMLEEANKEQDPAKRYEKYADIQAWLIDSSLAIPNVSLGGTPSLRKTVPFSAPY
CHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCC
SLAGNKGVESYKYLKVQDKIVTTDEYAKAREKWLKEKEESNKKAQEELAKHVK
CCCCCCCCCCEEEEEEECEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8051706; 11463916 [H]