Click here to switch to the map view.

The map label for this gene is ypiA [H]

Identifier: 225861337

GI number: 225861337

Start: 1369129

End: 1370358

Strand: Reverse

Name: ypiA [H]

Synonym: SPT_1440

Alternate gene names: 225861337

Gene position: 1370358-1369129 (Counterclockwise)

Preceding gene: 225861338

Following gene: 225861336

Centisome position: 64.88

GC content: 40.57

Gene sequence:

>1230_bases
GTGAACAATAGTCAACAGATGTTACAGGCTTTGGAGGAGCAAGATTTAACTAAGGCTGAGCATTATTTCGCCAAAGCTTT
AGAAAATGATTCAAGTGATCTTCTGTATGAGTTGGCAACTTATCTTGAAGGGATTGGTTTCTATCCTCAGGCCAAGGAAA
TTTACCTGAAAATTGTAGAGGATTTTCCAGAGGTTCATCTTAATCTAGCTGCAATTGCTAGCGAGGATGGTCAAATAGAA
GAAGCCTTTACCTATCTTGAGGAAATCCAAGCTGACAGTGACTGGTATGTCTCGTCTTTGGTTTTGAAGGCAGACCTTTA
CCAGCTGGAAGGTTTGACAGATGTGGCACGTGAGAAATTATTGGAGGCCTTGACCTACTCAGAGGATTCTCTCTTGATAT
TGGGTTTGGCAGAGTTGGATAGTGAGTTGGAAAATTACCAAGCGGCTATTCAAGCCTATGCCCAGTTAGATAATCGCTCG
ATTTATGAGCAAACGGGCATTTCCACCTATCAACGAATTGGCTTTGCCTATGCTCAGTTAGGGAAATTTGAAACGGCTAC
TGAGTTTTTAGAAAAAGCCCTGGAGTTAGAATACGATGACTTAACAGCTTTTGAGTTGGCCAGTCTTTATTTTGATCAAG
AAGAATATCAAAAAGCCACCCTCTACTTTAAGCAGCTTGATACCATTTCTCCTGACTTTGAAGGCTATGAGTATGGGTAC
AGTCAGGCTTTACATAAGGAACATCAAGTTCAAGAAGCCCTGCATATCGCTAAGCAAGGATTAGAGAAAAATCCCTTTGA
AACTCGCCTCTTGCTAGCTGCTTCACAATTTTCTTATGAATTGCATGATGCTAGTGGTGCAGAAAATTATCTCCTTACTG
CAAAAGAAGACGCTGAGGATACAGAAGAAATCTTGCTTCGTTTAGCCACTATTTATCTGGAGCAGGAGCGTTATGAGGAT
ATTCTAGACTTGCAGAGTGAGGAGCCAGAAAATCTTTTGACCAAGTGGATGATTGCTCGTTCTTATCAAGAAATGGACGA
TTTGGATACTGCTTATGAGCATTATCAAGAGTTGACAGGAGATTTGAAGGACAATCCAGAATTTCTGGAACACTATATCT
ATCTCTTGCGTGAATTGGGACATTTTGAAGAAGCAAAAGTCCATGCTCACACTTACTTAAAACTGGTTCCAGATGATGTG
CAAATGCAAGAACTGTTTGAGAGATTGTAA

Upstream 100 bases:

>100_bases
ATTCCAGTTTATGCCTCTGCTAAGGTTGTCATTTCAGCCATTTTCGAATGGTATAAGGTAGTCAGTGGTCTATATGAATT
AGAGGGTGAGGAAGTCAAGA

Downstream 100 bases:

>100_bases
GAATGTTTAAACATATAGAACTGTAGTTTATCTCTTTTGATAGCTACGGTTTTTATTTGTATATGGTAGAATCTTTTTAC
AAAAATACTTGGTAATCTTG

Product: TPR domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MNNSQQMLQALEEQDLTKAEHYFAKALENDSSDLLYELATYLEGIGFYPQAKEIYLKIVEDFPEVHLNLAAIASEDGQIE
EAFTYLEEIQADSDWYVSSLVLKADLYQLEGLTDVAREKLLEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRS
IYEQTGISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTAFELASLYFDQEEYQKATLYFKQLDTISPDFEGYEYGY
SQALHKEHQVQEALHIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLTAKEDAEDTEEILLRLATIYLEQERYED
ILDLQSEEPENLLTKWMIARSYQEMDDLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDV
QMQELFERL

Sequences:

>Translated_409_residues
MNNSQQMLQALEEQDLTKAEHYFAKALENDSSDLLYELATYLEGIGFYPQAKEIYLKIVEDFPEVHLNLAAIASEDGQIE
EAFTYLEEIQADSDWYVSSLVLKADLYQLEGLTDVAREKLLEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRS
IYEQTGISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTAFELASLYFDQEEYQKATLYFKQLDTISPDFEGYEYGY
SQALHKEHQVQEALHIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLTAKEDAEDTEEILLRLATIYLEQERYED
ILDLQSEEPENLLTKWMIARSYQEMDDLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDV
QMQELFERL
>Mature_409_residues
MNNSQQMLQALEEQDLTKAEHYFAKALENDSSDLLYELATYLEGIGFYPQAKEIYLKIVEDFPEVHLNLAAIASEDGQIE
EAFTYLEEIQADSDWYVSSLVLKADLYQLEGLTDVAREKLLEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRS
IYEQTGISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTAFELASLYFDQEEYQKATLYFKQLDTISPDFEGYEYGY
SQALHKEHQVQEALHIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLTAKEDAEDTEEILLRLATIYLEQERYED
ILDLQSEEPENLLTKWMIARSYQEMDDLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDV
QMQELFERL

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 9 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 47493; Mature: 47493

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNSQQMLQALEEQDLTKAEHYFAKALENDSSDLLYELATYLEGIGFYPQAKEIYLKIVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DFPEVHLNLAAIASEDGQIEEAFTYLEEIQADSDWYVSSLVLKADLYQLEGLTDVAREKL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
LEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRSIYEQTGISTYQRIGFAYAQL
HHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHH
GKFETATEFLEKALELEYDDLTAFELASLYFDQEEYQKATLYFKQLDTISPDFEGYEYGY
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
SQALHKEHQVQEALHIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLTAKEDAED
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCH
TEEILLRLATIYLEQERYEDILDLQSEEPENLLTKWMIARSYQEMDDLDTAYEHYQELTG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDVQMQELFERL
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCHHHHHHHHC
>Mature Secondary Structure
MNNSQQMLQALEEQDLTKAEHYFAKALENDSSDLLYELATYLEGIGFYPQAKEIYLKIVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DFPEVHLNLAAIASEDGQIEEAFTYLEEIQADSDWYVSSLVLKADLYQLEGLTDVAREKL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
LEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRSIYEQTGISTYQRIGFAYAQL
HHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHH
GKFETATEFLEKALELEYDDLTAFELASLYFDQEEYQKATLYFKQLDTISPDFEGYEYGY
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
SQALHKEHQVQEALHIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLTAKEDAED
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCH
TEEILLRLATIYLEQERYEDILDLQSEEPENLLTKWMIARSYQEMDDLDTAYEHYQELTG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDVQMQELFERL
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]