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The map label for this gene is ydcI [H]

Identifier: 225861200

GI number: 225861200

Start: 1226944

End: 1229073

Strand: Reverse

Name: ydcI [H]

Synonym: SPT_1293

Alternate gene names: 225861200

Gene position: 1229073-1226944 (Counterclockwise)

Preceding gene: 225861204

Following gene: 225861199

Centisome position: 58.19

GC content: 42.91

Gene sequence:

>2130_bases
ATGGATAAAAAATATGAAAAAATCTCTCAGGATTTGGGAGTGACGTTAAAGCAAATTGATACCGTTCTAAGTTTGACAGC
TGAAGGGGCGACTATTCCCTTTATCGCGCGTTATCGCAAGGACATGACTGGTAGTCTGGATGAGGTGGCGATTAAGGCTA
TTATTGATTTGGATAAAAGTCTGACAAATCTCAATGACCGTAAGGAAGCTGTCTTAGCTAAGATTCAAGAACAAGGTAAG
TTGACCAAGGAATTGGAAGAAGCTATCTTAGTTGCCGAAAAATTAGCAGACGTTGAAGAACTCTATCTTCCTTATAAGGA
AAAGCGTCGTACCAAGGCAACCATTGCCCGTGAAGCTGGACTCTTTCCTCTTGCTCGCTTGATTTTGCAGAATATAGTTG
ACTTAGAGAAAGAAGCTGAAAAGTTCGTCTGTGAAGGATTTGCGACTGGCAAGGAAGCCTTGACCGGTGCAGTTGATATT
TTGGTCGAAGCCTTATCGGAAGATGTGACCTTGCGTTCTATGACTTATCAGGAAGTGCTGAGACACTCTAAACTCACTTC
TCAAGCCAAGGATGAAAGTCTTGATGAAAAGCAGGTTTTTCAGATTTATTATGATTTTTCAGAGACAGTTGGAACTATGC
AAGGCTATCGTACCTTGGCTCTCAATCGTGGGGAGAAACTTGGTGTCTTGAAGATCGGTTTTGAACATGCGACGGACCGT
ATTCTTGCCTTCTTTGCTACTCGTTTCAAGGTGAAAAATGCTTATATTGATGAAGTTGTTCAGCAATCCGTTAAGAAAAA
GGTCTTGCCTGCTATTGAGCGTCGTATTCGGACAGAATTAACTGAGAAAGCTGAAGAGGGAGCTATCCAACTTTTTTCTG
ACAATCTGCGCAATCTCCTCTTGGTTGCTCCACTGAAAGGGCGCGTGGTTCTTGGGTTTGACCCAGCCTTTCGTACAGGT
GCCAAGCTAGCTGTCGTGGATGCAACAGGAAAAATGCTGACAACTCAGGTTATTTATCCTGTTAAACCAGCATCAGCTCG
TCAAATCGAAGAAGCCAAGAAAGATTTAGCAGATTTAATTGGTCAATACGGTGTAGAGATTATTGCCATTGGAAATGGAA
CGGCCAGTCGTGAAAGTGAAGCTTTTGTAGCGGAAGTTCTGAAAGATTTCCCTGAAGTCAGCTATGTTATCGTTAATGAA
AGTGGTGCTTCTGTCTATTCTGCCAGCGAACTTGCTCGTCAGGAGTTTCCAGACTTGACCGTTGAAAAACGCTCTGCCAT
TTCTATCGCCCGTCGTTTGCAAGATCCTCTTGCGGAATTGGTCAAAATCGATCCTAAGTCAATTGGTGTCGGTCAATACC
AACACGATGTCAGTCAGAAGAAACTATCTGAGAGTCTGGACTTTGTTGTCGATACAGTGGTTAACCAAGTTGGTGTCAAT
GTCAATACAGCTAGCCCAGCTCTTCTTTCACACGTAGCTGGACTCAATAAAACCATTTCTGAAAATATCGTCAAATACCG
TGAGGAAGAGGGAAAAATCACTTCACGCTCTCAAATCAAGAAAGTTCCTCGTTTGGGGGCCAAGGCTTTTGAACAGGCTG
CTGGTTTCCTCCGTATCCCTGAAAGTAGCAATATCCTTGATAATACAGGAGTTCACCCAGAAAATTACGCTGCCGTTAAG
GAACTCTTCAAATGCTTGGACATTAAGGATCTGAATGAAGAGGCCCAAAGTAAACTCAAGTCGCTTTCAGTCAAGGAAAT
GGCGCAAGAGTTAGACCTTGGTCCAGAAACTCTTAAAGATATCATTGCAGATCTTCTCAAACCAGGTCGAGATTTCCGTG
ATTCCTTTGATGCTCCAGTTCTCCGTCAAGATGTCCTAGATATCAAGGACTTAGTGGTTGGACAAAAGCTAGAAGGAGTG
GTGCGTAATGTTGTTGATTTCGGTGCTTTTGTTGATATCGGAATTCATGAGGACGGTCTCATCCATATTTCCCATATGAG
TCGCAAGTTTATCAAACACCCTAGTCAAGTGGTGGCAGTTGGAGATTTGGTGAGCGTTTGGGTTAAGAAAATTGATACTG
AACGTGAAAAAGTTAATCTGTCTCTCCTAGCTCCAAATGAAACTGACTGA

Upstream 100 bases:

>100_bases
TTTTGAGCAGCCTACGGCTAGCTTCCTAGTTTGCTTTTTGATTTTTATTGAGTATGAAAAGGATTGGAGAAAGCCTTCCA
GCTTGTGGTATAATAGATTT

Downstream 100 bases:

>100_bases
TTATGTCAAGCAGGTTTCACTAGAAGACTTCGGCAGACCTTTCATCCATCATGTCCAGTGGAATAGGCGTCTACGTTCGA
CAGGTGGGCGATTTTTCCCC

Product: S1 RNA binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 709; Mature: 709

Protein sequence:

>709_residues
MDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQGK
LTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVDI
LVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATDR
ILAFFATRFKVKNAYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRTG
AKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVNE
SGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGVN
VNTASPALLSHVAGLNKTISENIVKYREEEGKITSRSQIKKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYAAVK
ELFKCLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGV
VRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKIDTEREKVNLSLLAPNETD

Sequences:

>Translated_709_residues
MDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQGK
LTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVDI
LVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATDR
ILAFFATRFKVKNAYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRTG
AKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVNE
SGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGVN
VNTASPALLSHVAGLNKTISENIVKYREEEGKITSRSQIKKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYAAVK
ELFKCLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGV
VRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKIDTEREKVNLSLLAPNETD
>Mature_709_residues
MDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQGK
LTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVDI
LVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATDR
ILAFFATRFKVKNAYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRTG
AKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVNE
SGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGVN
VNTASPALLSHVAGLNKTISENIVKYREEEGKITSRSQIKKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYAAVK
ELFKCLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGV
VRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKIDTEREKVNLSLLAPNETD

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=772, Percent_Identity=33.2901554404145, Blast_Score=370, Evalue=1e-102,
Organism=Homo sapiens, GI27597090, Length=719, Percent_Identity=21.9749652294854, Blast_Score=91, Evalue=3e-18,
Organism=Escherichia coli, GI87082262, Length=727, Percent_Identity=44.5667125171939, Blast_Score=547, Evalue=1e-157,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=48, Blast_Score=76, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17511129, Length=743, Percent_Identity=30.8209959623149, Blast_Score=270, Evalue=2e-72,
Organism=Caenorhabditis elegans, GI17552892, Length=348, Percent_Identity=27.8735632183908, Blast_Score=76, Evalue=7e-14,
Organism=Drosophila melanogaster, GI62484314, Length=757, Percent_Identity=34.0819022457067, Blast_Score=377, Evalue=1e-104,
Organism=Drosophila melanogaster, GI24640080, Length=587, Percent_Identity=22.9982964224872, Blast_Score=102, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 78648; Mature: 78648

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50126 S1 ; PS00283 SOYBEAN_KUNITZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKS
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LTNLNDRKEAVLAKIQEQGKLTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAG
HHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
LFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVDILVEALSEDVTLRSMTYQEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATDR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEECHHHHHHH
ILAFFATRFKVKNAYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
LVAPLKGRVVLGFDPAFRTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLI
EEECCCCCEEEECCHHHHCCCEEEEEECCCCEEEHEEEECCCCCCHHHHHHHHHHHHHHH
GQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVNESGASVYSASELARQEFPDLT
HHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
VEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGVN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VNTASPALLSHVAGLNKTISENIVKYREEEGKITSRSQIKKVPRLGAKAFEQAAGFLRIP
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEECC
ESSNILDNTGVHPENYAAVKELFKCLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKD
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGVVRNVVDFGAFVDIGIHEDGL
HHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCE
IHISHMSRKFIKHPSQVVAVGDLVSVWVKKIDTEREKVNLSLLAPNETD
EEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCC
>Mature Secondary Structure
MDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKS
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LTNLNDRKEAVLAKIQEQGKLTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAG
HHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
LFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVDILVEALSEDVTLRSMTYQEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATDR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEECHHHHHHH
ILAFFATRFKVKNAYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
LVAPLKGRVVLGFDPAFRTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLI
EEECCCCCEEEECCHHHHCCCEEEEEECCCCEEEHEEEECCCCCCHHHHHHHHHHHHHHH
GQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVNESGASVYSASELARQEFPDLT
HHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
VEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGVN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VNTASPALLSHVAGLNKTISENIVKYREEEGKITSRSQIKKVPRLGAKAFEQAAGFLRIP
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEECC
ESSNILDNTGVHPENYAAVKELFKCLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKD
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGVVRNVVDFGAFVDIGIHEDGL
HHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCE
IHISHMSRKFIKHPSQVVAVGDLVSVWVKKIDTEREKVNLSLLAPNETD
EEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]