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The map label for this gene is yybJ [H]

Identifier: 225861156

GI number: 225861156

Start: 1187582

End: 1188169

Strand: Reverse

Name: yybJ [H]

Synonym: SPT_1246

Alternate gene names: 225861156

Gene position: 1188169-1187582 (Counterclockwise)

Preceding gene: 225861157

Following gene: 225861155

Centisome position: 56.25

GC content: 41.33

Gene sequence:

>588_bases
ATGTTGCAGCTTACTCATGTGACCTTAAAAACGCGACAAGTCATCTTGCAAGATGCGGATTTCACCTTTAAAAAGGGTAG
GTTTTATGGTCTTCTTGCTATCAATGGCTCTGGAAAGACGACCCTGTTCCGTGCCATTAGCAATTTAATTCCCATAAGTA
GTGGAAATATCGCAGCCCCTCCTTCTTTATTTTATTATGAGAGTATTGAATGGCTGGATGGAAACTTAAGTGGGATGGAC
TACCTTCGTCTTATCAAAAACATCTGGAAGTCAGACCTAAACTTGAGAGATGAAATCGCCTACTGGGAAATGGCTGACTA
TATCAGTCTTCCCATCCGCAAGTATTCCTTAGGCATGAAGCAACGCTTGGTGATTGCTATGTATTTTCTCAGTCAGGCAA
AATGCTGGCTCATGGATGAGATTACAAATGGCTTAGACGAGTATTATCGACAGAAGTTTTTTGATAGGCTAGCACAAATC
GATAGACAAGAACAGCTGGTTCTTTTAAGTTCCCACTATAAGGAAGAGTTGGTTGATGTCTGCGATAGAGTAGTAACCAT
TCATCAGGGGCAGATAGAAGAGGTTTAG

Upstream 100 bases:

>100_bases
ATCCAGTTGGTTCTGGCTGGAACTACGGTCGTTATGAGATCATAAACTATTACAGCGGAGGCTATTAATTCTTAAAGAGT
GAGAAAAAGGAGGGCTAGAT

Downstream 100 bases:

>100_bases
TTTATGAAAGATGTTAGTCTATTTTTATTGAAAAAAGTTTTCAAAAGCCGCTTAAACTGGATTGTCTTAGCTTTATTTGT
ATCTGTACTCGGTGTTACCT

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MLQLTHVTLKTRQVILQDADFTFKKGRFYGLLAINGSGKTTLFRAISNLIPISSGNIAAPPSLFYYESIEWLDGNLSGMD
YLRLIKNIWKSDLNLRDEIAYWEMADYISLPIRKYSLGMKQRLVIAMYFLSQAKCWLMDEITNGLDEYYRQKFFDRLAQI
DRQEQLVLLSSHYKEELVDVCDRVVTIHQGQIEEV

Sequences:

>Translated_195_residues
MLQLTHVTLKTRQVILQDADFTFKKGRFYGLLAINGSGKTTLFRAISNLIPISSGNIAAPPSLFYYESIEWLDGNLSGMD
YLRLIKNIWKSDLNLRDEIAYWEMADYISLPIRKYSLGMKQRLVIAMYFLSQAKCWLMDEITNGLDEYYRQKFFDRLAQI
DRQEQLVLLSSHYKEELVDVCDRVVTIHQGQIEEV
>Mature_195_residues
MLQLTHVTLKTRQVILQDADFTFKKGRFYGLLAINGSGKTTLFRAISNLIPISSGNIAAPPSLFYYESIEWLDGNLSGMD
YLRLIKNIWKSDLNLRDEIAYWEMADYISLPIRKYSLGMKQRLVIAMYFLSQAKCWLMDEITNGLDEYYRQKFFDRLAQI
DRQEQLVLLSSHYKEELVDVCDRVVTIHQGQIEEV

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI105990541, Length=205, Percent_Identity=23.9024390243902, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI27262624, Length=206, Percent_Identity=24.2718446601942, Blast_Score=70, Evalue=8e-13,
Organism=Homo sapiens, GI27262626, Length=206, Percent_Identity=24.2718446601942, Blast_Score=70, Evalue=8e-13,
Organism=Homo sapiens, GI27477115, Length=197, Percent_Identity=25.3807106598985, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI153792144, Length=205, Percent_Identity=24.390243902439, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI6005701, Length=201, Percent_Identity=25.8706467661692, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27436953, Length=195, Percent_Identity=22.5641025641026, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI66529005, Length=201, Percent_Identity=26.3681592039801, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007184, Length=181, Percent_Identity=25.9668508287293, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221500365, Length=181, Percent_Identity=25.9668508287293, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28574150, Length=204, Percent_Identity=22.5490196078431, Blast_Score=73, Evalue=9e-14,
Organism=Drosophila melanogaster, GI116007328, Length=204, Percent_Identity=22.0588235294118, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 22762; Mature: 22762

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQLTHVTLKTRQVILQDADFTFKKGRFYGLLAINGSGKTTLFRAISNLIPISSGNIAAP
CEEEEEEHHHHHHHHHHCCCCEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCC
PSLFYYESIEWLDGNLSGMDYLRLIKNIWKSDLNLRDEIAYWEMADYISLPIRKYSLGMK
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCHH
QRLVIAMYFLSQAKCWLMDEITNGLDEYYRQKFFDRLAQIDRQEQLVLLSSHYKEELVDV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CDRVVTIHQGQIEEV
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MLQLTHVTLKTRQVILQDADFTFKKGRFYGLLAINGSGKTTLFRAISNLIPISSGNIAAP
CEEEEEEHHHHHHHHHHCCCCEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCC
PSLFYYESIEWLDGNLSGMDYLRLIKNIWKSDLNLRDEIAYWEMADYISLPIRKYSLGMK
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCHH
QRLVIAMYFLSQAKCWLMDEITNGLDEYYRQKFFDRLAQIDRQEQLVLLSSHYKEELVDV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CDRVVTIHQGQIEEV
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938973; 7584024; 9384377 [H]