Click here to switch to the map view.

The map label for this gene is ycxD [H]

Identifier: 225860827

GI number: 225860827

Start: 826142

End: 827413

Strand: Reverse

Name: ycxD [H]

Synonym: SPT_0881

Alternate gene names: 225860827

Gene position: 827413-826142 (Counterclockwise)

Preceding gene: 225860837

Following gene: 225860819

Centisome position: 39.17

GC content: 43.16

Gene sequence:

>1272_bases
ATGAAGAGACAAAGCAAGTACAAAGAGGTCGTTTCCTATCTGAAAAATGGTATCGAGTCTGGACGATTTCCGACGGGTAG
TCGCCTGCCTTCTATCCGTCAACTGAGCCTTGACTTTCACTGCAGCAAGGACACCATTCAACGAGCCCTGCTGGAATTAC
GGCACGAACAATACCTCTATGCCAAGCCTCAGAGTGGCTACTATGTATTAGAACAAGGGCAACATCAAGACCTAGAAATC
GAGGTTACCGACGAACATGCCAGTGCCTATGACGATTTCCGACTCTGTGTCAATGAAACCTTGATTGGCCGAGAAAACTA
CCTCTTCAACTACTATGACAATCAAGAAGGATTAGAAGACCTAAGACAGTCCATTCACAAACTCCTCTTTGAGCAAGCTC
TCTACTGCAAGGCTAACCAACTAGTACTGACTTCTGGAACCCAACAAGCCTTGTTTATCCTCTCTCAAATATCCTTTCCT
AGACAAGCCAAGGAAATCTTGGTGGAACAGCCAACCTACCATCGGATGAATCGCCTCTTGATTGCACAGGGGCTGGACTA
TCAAACGATTGAACGAGGCATTGATGGGATTGACTTGGAGGAGCTGGAAGGCCACTTCAAAACAGGAAAAATTAAATTTT
TCTACACCATTCCCCGATTTCACTATCCTCTGGGACATTCCTATTCTGAGCAAGACAAACGATCTATTCTTAACTTAGCT
GCCAAGTATGATGTCTATATCGTAGAGGACGATTATCTGGGTGATTTGGACTCCAAGAAGGGCCAAACCTTCCACTATCT
TGATACAGAGGAGCGTGTCATTTATATCAAGTCCTTCTCGACCAGCCTTTTTCCTGCCCTTCGTATTACAGCACTCATTC
TTCCAAATGCTATCAAAGAAGCATTTATGGCCTACAAAAATATCCTAGACTACGACAGCAACCTCATTATGCAAAAGGCC
CTGTCACTCTATATTGACAGTCAATTGTTTGAAAAAAATCGTTTGGCTCGCTTGACCAATCATGAATCTTACCAAAAACA
AATCGAGGAAAGGATAACTAAAACACCTTGTCCCCTTCCTCATTATCCCCTACACGATGGTTTATTGCTAGACCTGAGAC
AGTATCCTAAAATCGCCAGTCTCAAACACAGTCAACTGGGCTTGGACTTCTTTGAAGAGGCCTATTTAAGCACCTGTCCT
TATCAATTTGCCAAGGTGTCCCTAGACAATCTGGAAAATGTTTTAAACTATTTAAAAGCAGAATTGGAATGA

Upstream 100 bases:

>100_bases
ATACCACATTTGCCCCTAGATGTGAACGAGAGAAACGCTCTAGACATTGCCAAGAAGGAAAAAAAAGGGTACAATGTAAC
AAAATCAAGGGAGGTCTGGA

Downstream 100 bases:

>100_bases
CATCCAACTCTGCTTTTTCTTATTCTTCAACTTCAGTTAGACTTGCTGCTTTTTCAAGATAGCTTTGGTAAGTTCCTTCA
TCCTTAAGTTTTTGGATGAC

Product: transcriptional regulator GntR family

Products: NA

Alternate protein names: ORF8 [H]

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MKRQSKYKEVVSYLKNGIESGRFPTGSRLPSIRQLSLDFHCSKDTIQRALLELRHEQYLYAKPQSGYYVLEQGQHQDLEI
EVTDEHASAYDDFRLCVNETLIGRENYLFNYYDNQEGLEDLRQSIHKLLFEQALYCKANQLVLTSGTQQALFILSQISFP
RQAKEILVEQPTYHRMNRLLIAQGLDYQTIERGIDGIDLEELEGHFKTGKIKFFYTIPRFHYPLGHSYSEQDKRSILNLA
AKYDVYIVEDDYLGDLDSKKGQTFHYLDTEERVIYIKSFSTSLFPALRITALILPNAIKEAFMAYKNILDYDSNLIMQKA
LSLYIDSQLFEKNRLARLTNHESYQKQIEERITKTPCPLPHYPLHDGLLLDLRQYPKIASLKHSQLGLDFFEEAYLSTCP
YQFAKVSLDNLENVLNYLKAELE

Sequences:

>Translated_423_residues
MKRQSKYKEVVSYLKNGIESGRFPTGSRLPSIRQLSLDFHCSKDTIQRALLELRHEQYLYAKPQSGYYVLEQGQHQDLEI
EVTDEHASAYDDFRLCVNETLIGRENYLFNYYDNQEGLEDLRQSIHKLLFEQALYCKANQLVLTSGTQQALFILSQISFP
RQAKEILVEQPTYHRMNRLLIAQGLDYQTIERGIDGIDLEELEGHFKTGKIKFFYTIPRFHYPLGHSYSEQDKRSILNLA
AKYDVYIVEDDYLGDLDSKKGQTFHYLDTEERVIYIKSFSTSLFPALRITALILPNAIKEAFMAYKNILDYDSNLIMQKA
LSLYIDSQLFEKNRLARLTNHESYQKQIEERITKTPCPLPHYPLHDGLLLDLRQYPKIASLKHSQLGLDFFEEAYLSTCP
YQFAKVSLDNLENVLNYLKAELE
>Mature_423_residues
MKRQSKYKEVVSYLKNGIESGRFPTGSRLPSIRQLSLDFHCSKDTIQRALLELRHEQYLYAKPQSGYYVLEQGQHQDLEI
EVTDEHASAYDDFRLCVNETLIGRENYLFNYYDNQEGLEDLRQSIHKLLFEQALYCKANQLVLTSGTQQALFILSQISFP
RQAKEILVEQPTYHRMNRLLIAQGLDYQTIERGIDGIDLEELEGHFKTGKIKFFYTIPRFHYPLGHSYSEQDKRSILNLA
AKYDVYIVEDDYLGDLDSKKGQTFHYLDTEERVIYIKSFSTSLFPALRITALILPNAIKEAFMAYKNILDYDSNLIMQKA
LSLYIDSQLFEKNRLARLTNHESYQKQIEERITKTPCPLPHYPLHDGLLLDLRQYPKIASLKHSQLGLDFFEEAYLSTCP
YQFAKVSLDNLENVLNYLKAELE

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=348, Percent_Identity=25, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI1787710, Length=321, Percent_Identity=26.791277258567, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 49416; Mature: 49416

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRQSKYKEVVSYLKNGIESGRFPTGSRLPSIRQLSLDFHCSKDTIQRALLELRHEQYLY
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEEECCHHHHHHHHHHHHHHHEEE
AKPQSGYYVLEQGQHQDLEIEVTDEHASAYDDFRLCVNETLIGRENYLFNYYDNQEGLED
ECCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHH
LRQSIHKLLFEQALYCKANQLVLTSGTQQALFILSQISFPRQAKEILVEQPTYHRMNRLL
HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
IAQGLDYQTIERGIDGIDLEELEGHFKTGKIKFFYTIPRFHYPLGHSYSEQDKRSILNLA
HHCCCCHHHHHCCCCCCCHHHHCCCCCCCCEEEEEECCCEECCCCCCCCHHHHHHHHHHH
AKYDVYIVEDDYLGDLDSKKGQTFHYLDTEERVIYIKSFSTSLFPALRITALILPNAIKE
HHCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
AFMAYKNILDYDSNLIMQKALSLYIDSQLFEKNRLARLTNHESYQKQIEERITKTPCPLP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
HYPLHDGLLLDLRQYPKIASLKHSQLGLDFFEEAYLSTCPYQFAKVSLDNLENVLNYLKA
CCCCCCCCHHHHHHCCCHHCCCHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ELE
HCC
>Mature Secondary Structure
MKRQSKYKEVVSYLKNGIESGRFPTGSRLPSIRQLSLDFHCSKDTIQRALLELRHEQYLY
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEEECCHHHHHHHHHHHHHHHEEE
AKPQSGYYVLEQGQHQDLEIEVTDEHASAYDDFRLCVNETLIGRENYLFNYYDNQEGLED
ECCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHH
LRQSIHKLLFEQALYCKANQLVLTSGTQQALFILSQISFPRQAKEILVEQPTYHRMNRLL
HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
IAQGLDYQTIERGIDGIDLEELEGHFKTGKIKFFYTIPRFHYPLGHSYSEQDKRSILNLA
HHCCCCHHHHHCCCCCCCHHHHCCCCCCCCEEEEEECCCEECCCCCCCCHHHHHHHHHHH
AKYDVYIVEDDYLGDLDSKKGQTFHYLDTEERVIYIKSFSTSLFPALRITALILPNAIKE
HHCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
AFMAYKNILDYDSNLIMQKALSLYIDSQLFEKNRLARLTNHESYQKQIEERITKTPCPLP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
HYPLHDGLLLDLRQYPKIASLKHSQLGLDFFEEAYLSTCPYQFAKVSLDNLENVLNYLKA
CCCCCCCCHHHHHHCCCHHCCCHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ELE
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8355609; 8969502; 9384377 [H]