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The map label for this gene is ybgA [H]

Identifier: 225860099

GI number: 225860099

Start: 83265

End: 84008

Strand: Reverse

Name: ybgA [H]

Synonym: SPT_0096

Alternate gene names: 225860099

Gene position: 84008-83265 (Counterclockwise)

Preceding gene: 225860109

Following gene: 225860098

Centisome position: 3.98

GC content: 37.1

Gene sequence:

>744_bases
ATGGAGAAGGAAAATAGAGGTAAAAATATGGCAATTCCCAAATATCAATACATAAAAGACGAATTAAAAAATAAAATCAT
CTCTGGGCAGTTTAGCAGTGGAGATAAATTTTACACTGAAGCAGAACTCATTTCAATGTACGATGTCAGCTCTATCACAG
TTGTTCGCGCCTTAAACGACCTTGCCAAAGATGGCTATATTGTCCGCCAACAAGGAAAAGGAACTTTCATTTCACGTGCA
CGCAAACACAAGCTTGTAGAGTTTTCAGATATTGAACTCTTCAATGCTAAAGATGATAAGGTAACTGTTCTTTCAATTGA
ACGCGGAAACAAGCTTGTTTACTTGGAAAAATTGGGTCTACGTGGCGATCAATTCTACTACAAGATTGAACGTATCCGCG
AATCAAACGGTGTCGTTTATATCTACCATACATCCTACATCCCAGAACAATATATCAACGCAAATTATCCAAACCTTGAA
TACTATAGTTCTATCTATAATCGTTTCAAGTTAGACTACCACATTCACATGAATGATGAACACTTTGAAGAAATCAACGA
AATAGTCTTTCCAACTCCAGAACATGCGGCTTCAGTCCTCGGAGTCGATGAACATTTCCCTACTGTCCTACAAACTAAAA
TCACCAAACTCGAATCAACTGGCCAAGTTTTAGAATACAGTGAAACTTACAAACGATCTGATTACTACAAGATTAAATTC
ATCTCATGTGACCGTGATCACTAA

Upstream 100 bases:

>100_bases
AAATATGAGCAATCCCTATATCGCTTAATTTTTCAAACTATTATTCTAATTTTTTATTCAAAAGACTACTATTTTTTTCG
CTTTTATGGTAAAATTTTCT

Downstream 100 bases:

>100_bases
GAAGAAAGCCTGAGCCTAATCGCTCGGGCTTTTTCTATGCTTATTATACCACACCAAAAAGGTAGCGCTTACCTATTTTT
GGAAGATTCTATAATTTGTG

Product: transcriptional regulator, GntR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MEKENRGKNMAIPKYQYIKDELKNKIISGQFSSGDKFYTEAELISMYDVSSITVVRALNDLAKDGYIVRQQGKGTFISRA
RKHKLVEFSDIELFNAKDDKVTVLSIERGNKLVYLEKLGLRGDQFYYKIERIRESNGVVYIYHTSYIPEQYINANYPNLE
YYSSIYNRFKLDYHIHMNDEHFEEINEIVFPTPEHAASVLGVDEHFPTVLQTKITKLESTGQVLEYSETYKRSDYYKIKF
ISCDRDH

Sequences:

>Translated_247_residues
MEKENRGKNMAIPKYQYIKDELKNKIISGQFSSGDKFYTEAELISMYDVSSITVVRALNDLAKDGYIVRQQGKGTFISRA
RKHKLVEFSDIELFNAKDDKVTVLSIERGNKLVYLEKLGLRGDQFYYKIERIRESNGVVYIYHTSYIPEQYINANYPNLE
YYSSIYNRFKLDYHIHMNDEHFEEINEIVFPTPEHAASVLGVDEHFPTVLQTKITKLESTGQVLEYSETYKRSDYYKIKF
ISCDRDH
>Mature_247_residues
MEKENRGKNMAIPKYQYIKDELKNKIISGQFSSGDKFYTEAELISMYDVSSITVVRALNDLAKDGYIVRQQGKGTFISRA
RKHKLVEFSDIELFNAKDDKVTVLSIERGNKLVYLEKLGLRGDQFYYKIERIRESNGVVYIYHTSYIPEQYINANYPNLE
YYSSIYNRFKLDYHIHMNDEHFEEINEIVFPTPEHAASVLGVDEHFPTVLQTKITKLESTGQVLEYSETYKRSDYYKIKF
ISCDRDH

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=164, Percent_Identity=31.0975609756098, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 29045; Mature: 29045

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKENRGKNMAIPKYQYIKDELKNKIISGQFSSGDKFYTEAELISMYDVSSITVVRALND
CCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEHHHHHEECCCCHHHHHHHHHH
LAKDGYIVRQQGKGTFISRARKHKLVEFSDIELFNAKDDKVTVLSIERGNKLVYLEKLGL
HHHCCEEEEECCCCHHHHHHHHCCCEEECCEEEECCCCCEEEEEEEECCCEEEEEEECCC
RGDQFYYKIERIRESNGVVYIYHTSYIPEQYINANYPNLEYYSSIYNRFKLDYHIHMNDE
CCCHHHHEEEHHHCCCCEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHEEEEEEEEECHH
HFEEINEIVFPTPEHAASVLGVDEHFPTVLQTKITKLESTGQVLEYSETYKRSDYYKIKF
HHHHHHHHCCCCCHHHHHHCCCCHHCCHHHHHHHHHHHCCCCEEEHHHHHCCCCEEEEEE
ISCDRDH
EECCCCC
>Mature Secondary Structure
MEKENRGKNMAIPKYQYIKDELKNKIISGQFSSGDKFYTEAELISMYDVSSITVVRALND
CCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEHHHHHEECCCCHHHHHHHHHH
LAKDGYIVRQQGKGTFISRARKHKLVEFSDIELFNAKDDKVTVLSIERGNKLVYLEKLGL
HHHCCEEEEECCCCHHHHHHHHCCCEEECCEEEECCCCCEEEEEEEECCCEEEEEEECCC
RGDQFYYKIERIRESNGVVYIYHTSYIPEQYINANYPNLEYYSSIYNRFKLDYHIHMNDE
CCCHHHHEEEHHHCCCCEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHEEEEEEEEECHH
HFEEINEIVFPTPEHAASVLGVDEHFPTVLQTKITKLESTGQVLEYSETYKRSDYYKIKF
HHHHHHHHCCCCCHHHHHHCCCCHHCCHHHHHHHHHHHCCCCEEEHHHHHCCCCEEEEEE
ISCDRDH
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]