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The map label for this gene is dapL [H]

Identifier: 225859851

GI number: 225859851

Start: 2008864

End: 2009994

Strand: Reverse

Name: dapL [H]

Synonym: SP70585_2202

Alternate gene names: 225859851

Gene position: 2009994-2008864 (Counterclockwise)

Preceding gene: 225859852

Following gene: 225859850

Centisome position: 92.0

GC content: 46.95

Gene sequence:

>1131_bases
ATGTTAGATTTGATTCAGACTAGACGAGATTTACACCAGATTCCAGAGATTGGCTTGGAGGAGTTCAAGACTCAGGCTTA
TTTGCTGGATGTGATTGAGAAATTGACTACGGGCAAGGATTTTGTTCAAATTCGTACTTGGCGGACAGGGATTTTGGTCT
ACCTGCAGGGAAGTCAGCCGGAGCGAACCATTGGTTGGCGGACAGATATTGATGGCCTGCCTATCGTCGAACAAACAGGT
CTACCTTTTGCTTCTCAACACCAAGGTCGCATGCATGCCTGTGGTCATGATTTTCATATGACCATTGCCTTAGGCTGTCT
TGAGCGCGCCCTTGAGGAGCAACCCAAGAATAATCTGCTCTTTCTATTTCAGCCTGCTGAAGAAAATGAAGCTGGTGGTA
TGCTCATGTATGAGGACGGTGCTTTTGGAGATTGGTTGCCAAACCAATTCTATGGTCTCCATGTTCGTCCAGATTTGAAA
GTCGGCCAGATTGCGACTAATACTCATACACTCTTTGCAGGAACTTGCGAGGTGAAGATCCGTTTCAAAGGCAAAGGTGG
CCACGCAGCTTTTCCTCATGAAGCCAATGACGCCTTGGTAGCGGCTAGTTACTTTGTGACCCAAGTGCAGTCAGTTGTTA
GCCGCAATGTCAACCCAATCGAGGGAGCAGTGGTGACCTTCGGCGTTTTTCAAGCTGGAACCACCAACAATGTCATCACA
GACACAGCTTTTTTACATGGAACTATTCGTGCCTTGACACAGGACATGAGTCTCTTGGTGCAAAAGAGGGTAAAAACAGT
TGCAGAAGGGGTTGCAGCTGCCTTTGATATGGAAGTCGAAGTGGAACTCAAACAAGGTGGATACCTACCTGTTGAGAACA
ATCCAGCCTTGGCGCGTGAACTGATGGACTTCTTTGACGAAAAAGACGGAATCGAGTTGATTGATATCGAACCTGCTATG
ACAGGCGAGGACTTTGGTTATCTCCTTTCAAAGGTTGATGGCGTGATGTTTTGGCTAGGTATCGATAGTCCCTACGCTCT
TCATCACCCTCAAATGAGTCCTAAGGAAGAAGTCTTAGCTATTGGGGTGGCTGCGGTGTCTAGTTTCCTGAAAAAGAAGG
CAGCAGAATAG

Upstream 100 bases:

>100_bases
ACAGCGCTAGAGGATGCGCTTCGTACCTTGTAATTGTAAAAGTAAAAAAGAGGCGGAACCCTTTTTCCAGCCTCTTTCTG
CTATATCGGAGGACAGATAG

Downstream 100 bases:

>100_bases
AGGGCTTGTCTATGAAATCGGAATTACGCAAGCAAGTCTTGCATGAAATGAAGACTTTATCTCAAGAACAAAAACAGGCT
ATAGACCAAGCTTTAACCGA

Product: peptidase, M20/M25/M40 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MLDLIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTG
LPFASQHQGRMHACGHDFHMTIALGCLERALEEQPKNNLLFLFQPAEENEAGGMLMYEDGAFGDWLPNQFYGLHVRPDLK
VGQIATNTHTLFAGTCEVKIRFKGKGGHAAFPHEANDALVAASYFVTQVQSVVSRNVNPIEGAVVTFGVFQAGTTNNVIT
DTAFLHGTIRALTQDMSLLVQKRVKTVAEGVAAAFDMEVEVELKQGGYLPVENNPALARELMDFFDEKDGIELIDIEPAM
TGEDFGYLLSKVDGVMFWLGIDSPYALHHPQMSPKEEVLAIGVAAVSSFLKKKAAE

Sequences:

>Translated_376_residues
MLDLIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTG
LPFASQHQGRMHACGHDFHMTIALGCLERALEEQPKNNLLFLFQPAEENEAGGMLMYEDGAFGDWLPNQFYGLHVRPDLK
VGQIATNTHTLFAGTCEVKIRFKGKGGHAAFPHEANDALVAASYFVTQVQSVVSRNVNPIEGAVVTFGVFQAGTTNNVIT
DTAFLHGTIRALTQDMSLLVQKRVKTVAEGVAAAFDMEVEVELKQGGYLPVENNPALARELMDFFDEKDGIELIDIEPAM
TGEDFGYLLSKVDGVMFWLGIDSPYALHHPQMSPKEEVLAIGVAAVSSFLKKKAAE
>Mature_376_residues
MLDLIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTG
LPFASQHQGRMHACGHDFHMTIALGCLERALEEQPKNNLLFLFQPAEENEAGGMLMYEDGAFGDWLPNQFYGLHVRPDLK
VGQIATNTHTLFAGTCEVKIRFKGKGGHAAFPHEANDALVAASYFVTQVQSVVSRNVNPIEGAVVTFGVFQAGTTNNVIT
DTAFLHGTIRALTQDMSLLVQKRVKTVAEGVAAAFDMEVEVELKQGGYLPVENNPALARELMDFFDEKDGIELIDIEPAM
TGEDFGYLLSKVDGVMFWLGIDSPYALHHPQMSPKEEVLAIGVAAVSSFLKKKAAE

Specific function: Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate [H]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family. DapL subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081880, Length=414, Percent_Identity=24.6376811594203, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.47 [H]

Molecular weight: Translated: 41621; Mature: 41621

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQP
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECEEEEEEECCCC
ERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLERALEEQPKNNLL
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCEE
FLFQPAEENEAGGMLMYEDGAFGDWLPNQFYGLHVRPDLKVGQIATNTHTLFAGTCEVKI
EEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEECCCEEEEEEEEEEEE
RFKGKGGHAAFPHEANDALVAASYFVTQVQSVVSRNVNPIEGAVVTFGVFQAGTTNNVIT
EEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEE
DTAFLHGTIRALTQDMSLLVQKRVKTVAEGVAAAFDMEVEVELKQGGYLPVENNPALARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCHHHHHH
LMDFFDEKDGIELIDIEPAMTGEDFGYLLSKVDGVMFWLGIDSPYALHHPQMSPKEEVLA
HHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEECCCCCEECCCCCCCHHHHHH
IGVAAVSSFLKKKAAE
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLDLIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQP
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECEEEEEEECCCC
ERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLERALEEQPKNNLL
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCEE
FLFQPAEENEAGGMLMYEDGAFGDWLPNQFYGLHVRPDLKVGQIATNTHTLFAGTCEVKI
EEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEECCCEEEEEEEEEEEE
RFKGKGGHAAFPHEANDALVAASYFVTQVQSVVSRNVNPIEGAVVTFGVFQAGTTNNVIT
EEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEE
DTAFLHGTIRALTQDMSLLVQKRVKTVAEGVAAAFDMEVEVELKQGGYLPVENNPALARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCHHHHHH
LMDFFDEKDGIELIDIEPAMTGEDFGYLLSKVDGVMFWLGIDSPYALHHPQMSPKEEVLA
HHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEECCCCCEECCCCCCCHHHHHH
IGVAAVSSFLKKKAAE
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA