Click here to switch to the map view.

The map label for this gene is araD

Identifier: 225859789

GI number: 225859789

Start: 1944969

End: 1945673

Strand: Reverse

Name: araD

Synonym: SP70585_2119

Alternate gene names: 225859789

Gene position: 1945673-1944969 (Counterclockwise)

Preceding gene: 225859790

Following gene: 225859788

Centisome position: 89.06

GC content: 42.55

Gene sequence:

>705_bases
ATGAATCAAGTAATCAATGCTATGCGTAAACGAGTATGTGATGCCAATCAATCATTGCCAAAACATGGACTTGTCAAATT
TACCTGGGGGAATGTATCTGAAGTCAATCGCGAACTCGGTGTCATTGTTATCAAACCATCAGGCGTGGATTATGACGAAT
TGACACCTGAAAACATGGTAGTGACTGATCTAGATGGTAAGATCCTAGAAGGGGATTTAAGACCATCTTCCGACCTCCCA
ACTCATGTGCAATTATATAAGACTTGGTCAGAAATTGGTAGTGTGGTTCACACCCATTCGACAGAAGCTGTTGGTTGGGC
TCAGGCAGGTCGTGATATTCCTTTCTACGGAACAACCCATGCAGATTATTTCTACGGTTCAATCCCTTGCGCCCGTAGTT
TGACCAAGGACGAAGTAGAAGTGACCTATGAAAAAGATACTGGCCTGGTTATCGTAGAAGAGTTTGAACATCGCGGACTT
AACCCGGTTGAAGTACCAGGAATTGTTGTACGCAATCACGGTCCATTCACCTGGGGCAAAAATCCAGAGAATGCTGTTTA
TCACTCTGTCGTACTAGAGGAAGTATCAAAGATGAATCGCTTTACAGAACAAATCAATCCAAGAGTTGAACCTGCTCCCC
AGTACATACTAGAAAAACACTACCAACGTAAACATGGACCAAATGCTTATTATGGTCAAAAGTAA

Upstream 100 bases:

>100_bases
TGGTCTGAAAATTGTGAAACAGTAGAAGAAACACGCGCAGCCATTCAAGAGGCGCAAGCTTTTCTCTATCCACTCATTAA
GAAAGCAGGTTTGATGTAAG

Downstream 100 bases:

>100_bases
GAACGACGAAGGAGGAGAAAAAGATAAATTTAGCTCCTCTTTTTACATTTGATTTTTATTGAGAGTAAAGTTGGAGTTGA
AGTAATTTTGAAAGATTTTT

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNQVINAMRKRVCDANQSLPKHGLVKFTWGNVSEVNRELGVIVIKPSGVDYDELTPENMVVTDLDGKILEGDLRPSSDLP
THVQLYKTWSEIGSVVHTHSTEAVGWAQAGRDIPFYGTTHADYFYGSIPCARSLTKDEVEVTYEKDTGLVIVEEFEHRGL
NPVEVPGIVVRNHGPFTWGKNPENAVYHSVVLEEVSKMNRFTEQINPRVEPAPQYILEKHYQRKHGPNAYYGQK

Sequences:

>Translated_234_residues
MNQVINAMRKRVCDANQSLPKHGLVKFTWGNVSEVNRELGVIVIKPSGVDYDELTPENMVVTDLDGKILEGDLRPSSDLP
THVQLYKTWSEIGSVVHTHSTEAVGWAQAGRDIPFYGTTHADYFYGSIPCARSLTKDEVEVTYEKDTGLVIVEEFEHRGL
NPVEVPGIVVRNHGPFTWGKNPENAVYHSVVLEEVSKMNRFTEQINPRVEPAPQYILEKHYQRKHGPNAYYGQK
>Mature_234_residues
MNQVINAMRKRVCDANQSLPKHGLVKFTWGNVSEVNRELGVIVIKPSGVDYDELTPENMVVTDLDGKILEGDLRPSSDLP
THVQLYKTWSEIGSVVHTHSTEAVGWAQAGRDIPFYGTTHADYFYGSIPCARSLTKDEVEVTYEKDTGLVIVEEFEHRGL
NPVEVPGIVVRNHGPFTWGKNPENAVYHSVVLEEVSKMNRFTEQINPRVEPAPQYILEKHYQRKHGPNAYYGQK

Specific function: L-arabinose catabolism; third step. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786247, Length=231, Percent_Identity=53.6796536796537, Blast_Score=268, Evalue=2e-73,
Organism=Escherichia coli, GI1790642, Length=230, Percent_Identity=52.1739130434783, Blast_Score=268, Evalue=3e-73,
Organism=Escherichia coli, GI1790008, Length=231, Percent_Identity=51.9480519480519, Blast_Score=265, Evalue=2e-72,
Organism=Escherichia coli, GI1789164, Length=208, Percent_Identity=27.4038461538462, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: 136 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 26445; Mature: 26445

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQVINAMRKRVCDANQSLPKHGLVKFTWGNVSEVNRELGVIVIKPSGVDYDELTPENMV
CCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCCCEEEECCCCCCHHHCCCCCEE
VTDLDGKILEGDLRPSSDLPTHVQLYKTWSEIGSVVHTHSTEAVGWAQAGRDIPFYGTTH
EECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCC
ADYFYGSIPCARSLTKDEVEVTYEKDTGLVIVEEFEHRGLNPVEVPGIVVRNHGPFTWGK
CCEEECCCCHHHCCCCCCEEEEEECCCCEEEEECHHHCCCCCCCCCEEEEECCCCCCCCC
NPENAVYHSVVLEEVSKMNRFTEQINPRVEPAPQYILEKHYQRKHGPNAYYGQK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNQVINAMRKRVCDANQSLPKHGLVKFTWGNVSEVNRELGVIVIKPSGVDYDELTPENMV
CCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCCCEEEECCCCCCHHHCCCCCEE
VTDLDGKILEGDLRPSSDLPTHVQLYKTWSEIGSVVHTHSTEAVGWAQAGRDIPFYGTTH
EECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCC
ADYFYGSIPCARSLTKDEVEVTYEKDTGLVIVEEFEHRGLNPVEVPGIVVRNHGPFTWGK
CCEEECCCCHHHCCCCCCEEEEEECCCCEEEEECHHHCCCCCCCCCEEEEECCCCCCCCC
NPENAVYHSVVLEEVSKMNRFTEQINPRVEPAPQYILEKHYQRKHGPNAYYGQK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA