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The map label for this gene is ybeY [C]

Identifier: 225853581

GI number: 225853581

Start: 2094572

End: 2095078

Strand: Direct

Name: ybeY [C]

Synonym: BMEA_A2215

Alternate gene names: 225853581

Gene position: 2094572-2095078 (Clockwise)

Preceding gene: 225853580

Following gene: 225853582

Centisome position: 98.54

GC content: 55.23

Gene sequence:

>507_bases
GTGTCAGACAACGCGATCCATATTGATATCATGATCGAAGCCGGCAACTGGCCGGACGAAGCGAGCCTTGAAAGCCTCGT
GAGCAAGTCGGTTGCCGCCGCCTGGAACAATCTGGGCCTCAAGAGTGCTACAAGCGAACTGAGCGTGGTTTTTACCGACG
ATGCCTCCATTCAGCTGTTGAACGGCGAATGGCGCGGCAAGGACAAGCCGACCAATGTTTTGTCCTTTCCAGCCTTTCCG
GTAAAGGCTGGTTCCCAGCCGGGGCCGATGCTGGGCGATATCGTCATCGCGCGCGAAACGGTGGAGCGCGAGGCGAAGGA
AGAGGGCAAGCCGATCGAAAATCACCTCTCCCACCTCGTTGTACATGGCTTTCTGCATCTTTTGGGGTACGATCATGAAA
CGGATGAGGAAGCGGAAGTGATGGAAGCGCGCGAGCGTGAAATCCTTCATGCTCTTGCCATTCCCGACCCTTATGCTGTA
TCCGATGAGGACATTAACAACGATTGA

Upstream 100 bases:

>100_bases
GGAAACACGATTTAAAAAAATGCTGTCTGCCTTTTGAGCAGACAGCTTTTATCCAATTGAAAGGACGAAGCGGTCTGCTG
GAAGGCGATCGCTGCATAAC

Downstream 100 bases:

>100_bases
CCATGGCTGAACAGACTTTGCACCCTCTGTCCGCTGGCGATAATCGCGGCGAGACCCAAGATTCAGAAGGACAAAGTACG
CAGCGGTCGTCTGTGACCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MSDNAIHIDIMIEAGNWPDEASLESLVSKSVAAAWNNLGLKSATSELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFP
VKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV
SDEDINND

Sequences:

>Translated_168_residues
MSDNAIHIDIMIEAGNWPDEASLESLVSKSVAAAWNNLGLKSATSELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFP
VKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV
SDEDINND
>Mature_167_residues
SDNAIHIDIMIEAGNWPDEASLESLVSKSVAAAWNNLGLKSATSELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPV
KAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAVS
DEDINND

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=119, Percent_Identity=56.3025210084034, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BRUA2 (Q2YQS6)

Other databases:

- EMBL:   AM040264
- RefSeq:   YP_415476.1
- ProteinModelPortal:   Q2YQS6
- SMR:   Q2YQS6
- STRING:   Q2YQS6
- GeneID:   3788574
- GenomeReviews:   AM040264_GR
- KEGG:   bmf:BAB1_2156
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- ProtClustDB:   CLSK864324
- BioCyc:   BMEL359391:BAB1_2156-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18423; Mature: 18291

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNAIHIDIMIEAGNWPDEASLESLVSKSVAAAWNNLGLKSATSELSVVFTDDASIQLL
CCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEE
NGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLV
CCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAVSDEDINND
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDNAIHIDIMIEAGNWPDEASLESLVSKSVAAAWNNLGLKSATSELSVVFTDDASIQLL
CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEE
NGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLV
CCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAVSDEDINND
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA