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The map label for this gene is ydcO [H]

Identifier: 225853542

GI number: 225853542

Start: 2057180

End: 2058331

Strand: Reverse

Name: ydcO [H]

Synonym: BMEA_A2175

Alternate gene names: 225853542

Gene position: 2058331-2057180 (Counterclockwise)

Preceding gene: 225853543

Following gene: 225853541

Centisome position: 96.83

GC content: 61.81

Gene sequence:

>1152_bases
ATGCGTTTTTCGGTCTTTGCCTCTTCGGCGGTTGCCGCGATTGTCGGCTTCGGCGGCACATTGGCACTCATCATCGCCGC
CGCGCAGGTGCTCGGCGCCACACAGGCCGAAACCGCAAGCTGGGTTACGGCCATCTGCCTTGCCGTCGCCGCCGCTTCCG
CATGGCTCAGCATCCGCTATCGTATGCCGATCATTGCGGCCTGGTCCACGCCCGGCCTGGCACTGATCGGTGCAAGTGCG
GGCTTCACCATGGCGGAAGCGGTGGGCGCATTCATCGTGACCGCTCTCGCGCTAATCGCAACCGGCCTCATCCGGCAATT
GTCGGTTCTGGTTTCCCGCATCCCGGCCAGCGTGGCCTCGGGCATGTTGGCCGGTGTTCTCCTGAGCTTCGTCATCGCGG
CAGCCAAGACCGTTTCGATCGATCCAGCCTTTGTGCTGCCGCTGGTGGCGCTCTTTTTCCTGATCCGCCTGTTCAATCCA
TCGCTTGCGGTCATTGCGGTTCTGGTGCTGGGCATGGCCTTCGCCCTCGTCACGGGCCGCTCGCCCGCACTGCCTGCGCC
CGAGATATCCACGCTCACGCTTGTCTGGCCGCAATTCCACACAGGCGCGATGATCGGCATCGCGGTGCCGCTCTATCTCG
TCACCATGGCTTCGCAGAATCTGCCGGGCTTTGCCGTTCTGCGCGCCTCGGGCTATGAGCCGCCAACCAGCGCCTGCCTG
CGCATCACCGGCCTGTTCTCGCTTTTAAGCGCCCCCTTAGGTGCATCAACCACGAACCTTGCAGCCATTTCGGCAGCCCT
TTGCACCAATCCCGATGCGCATCCCGACCACAGCAAACGCTGGCTGACCGGCCCTGTTTATGCGGCGATCTATGTGGTCT
TCGCACTCTTCGGCGCGTCGCTGGTTGCAATCTTCGCCGTGCTGCCGACAGTTCTCATCGCACTTGTCGCAGGGCTGGCC
CTGACCGGGCCGTTCATCAACGCCATGACGCTGGCGCTGAAGGATGAACATGAGCGGCTTGCAGCGACCATAACTTTCGC
CGTCACGGCCTCAGGCATTGCGTTTTTCGGGGTCGGCTCGGCTTTCTGGGCATTGATCGCCGGTCTTGCCGTGACTTTTC
TCGAACATTTTCGCAAAAAAATCTCGAATTAA

Upstream 100 bases:

>100_bases
GATCACCGCCTGTCGCGCCCGCAGGATCTCGACCTTCTGATCCGCACGGTTTCCGGCCTGGCGGAACGCATCAGCGAAAC
AGTATAGCGGAGCAGCGCCC

Downstream 100 bases:

>100_bases
TCACATTGGTTAGGCGAATTGCGGCCTGAATCCAGAAGTTGCATTCTTGAAAAGCTGCAATCTTTTCACCACGTCGAAAC
CAAGCCGCCAGATAAAATTG

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MRFSVFASSAVAAIVGFGGTLALIIAAAQVLGATQAETASWVTAICLAVAAASAWLSIRYRMPIIAAWSTPGLALIGASA
GFTMAEAVGAFIVTALALIATGLIRQLSVLVSRIPASVASGMLAGVLLSFVIAAAKTVSIDPAFVLPLVALFFLIRLFNP
SLAVIAVLVLGMAFALVTGRSPALPAPEISTLTLVWPQFHTGAMIGIAVPLYLVTMASQNLPGFAVLRASGYEPPTSACL
RITGLFSLLSAPLGASTTNLAAISAALCTNPDAHPDHSKRWLTGPVYAAIYVVFALFGASLVAIFAVLPTVLIALVAGLA
LTGPFINAMTLALKDEHERLAATITFAVTASGIAFFGVGSAFWALIAGLAVTFLEHFRKKISN

Sequences:

>Translated_383_residues
MRFSVFASSAVAAIVGFGGTLALIIAAAQVLGATQAETASWVTAICLAVAAASAWLSIRYRMPIIAAWSTPGLALIGASA
GFTMAEAVGAFIVTALALIATGLIRQLSVLVSRIPASVASGMLAGVLLSFVIAAAKTVSIDPAFVLPLVALFFLIRLFNP
SLAVIAVLVLGMAFALVTGRSPALPAPEISTLTLVWPQFHTGAMIGIAVPLYLVTMASQNLPGFAVLRASGYEPPTSACL
RITGLFSLLSAPLGASTTNLAAISAALCTNPDAHPDHSKRWLTGPVYAAIYVVFALFGASLVAIFAVLPTVLIALVAGLA
LTGPFINAMTLALKDEHERLAATITFAVTASGIAFFGVGSAFWALIAGLAVTFLEHFRKKISN
>Mature_383_residues
MRFSVFASSAVAAIVGFGGTLALIIAAAQVLGATQAETASWVTAICLAVAAASAWLSIRYRMPIIAAWSTPGLALIGASA
GFTMAEAVGAFIVTALALIATGLIRQLSVLVSRIPASVASGMLAGVLLSFVIAAAKTVSIDPAFVLPLVALFFLIRLFNP
SLAVIAVLVLGMAFALVTGRSPALPAPEISTLTLVWPQFHTGAMIGIAVPLYLVTMASQNLPGFAVLRASGYEPPTSACL
RITGLFSLLSAPLGASTTNLAAISAALCTNPDAHPDHSKRWLTGPVYAAIYVVFALFGASLVAIFAVLPTVLIALVAGLA
LTGPFINAMTLALKDEHERLAATITFAVTASGIAFFGVGSAFWALIAGLAVTFLEHFRKKISN

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=369, Percent_Identity=39.0243902439024, Blast_Score=236, Evalue=2e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 39338; Mature: 39338

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSVFASSAVAAIVGFGGTLALIIAAAQVLGATQAETASWVTAICLAVAAASAWLSIRY
CCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEE
RMPIIAAWSTPGLALIGASAGFTMAEAVGAFIVTALALIATGLIRQLSVLVSRIPASVAS
ECCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMLAGVLLSFVIAAAKTVSIDPAFVLPLVALFFLIRLFNPSLAVIAVLVLGMAFALVTGR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
SPALPAPEISTLTLVWPQFHTGAMIGIAVPLYLVTMASQNLPGFAVLRASGYEPPTSACL
CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHH
RITGLFSLLSAPLGASTTNLAAISAALCTNPDAHPDHSKRWLTGPVYAAIYVVFALFGAS
HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LVAIFAVLPTVLIALVAGLALTGPFINAMTLALKDEHERLAATITFAVTASGIAFFGVGS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
AFWALIAGLAVTFLEHFRKKISN
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRFSVFASSAVAAIVGFGGTLALIIAAAQVLGATQAETASWVTAICLAVAAASAWLSIRY
CCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEE
RMPIIAAWSTPGLALIGASAGFTMAEAVGAFIVTALALIATGLIRQLSVLVSRIPASVAS
ECCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMLAGVLLSFVIAAAKTVSIDPAFVLPLVALFFLIRLFNPSLAVIAVLVLGMAFALVTGR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
SPALPAPEISTLTLVWPQFHTGAMIGIAVPLYLVTMASQNLPGFAVLRASGYEPPTSACL
CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHH
RITGLFSLLSAPLGASTTNLAAISAALCTNPDAHPDHSKRWLTGPVYAAIYVVFALFGAS
HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LVAIFAVLPTVLIALVAGLALTGPFINAMTLALKDEHERLAATITFAVTASGIAFFGVGS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
AFWALIAGLAVTFLEHFRKKISN
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]