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The map label for this gene is ydcF [C]

Identifier: 225853539

GI number: 225853539

Start: 2055049

End: 2055684

Strand: Reverse

Name: ydcF [C]

Synonym: BMEA_A2172

Alternate gene names: 225853539

Gene position: 2055684-2055049 (Counterclockwise)

Preceding gene: 225853540

Following gene: 225853538

Centisome position: 96.71

GC content: 57.86

Gene sequence:

>636_bases
ATGAAATCATCCATACTGACCGCCGCGAAGGTATTGTGGGATTACCACTGCATCTATGATCCGCTTGAAGGCGCCGATAT
CATCATCGGCCTTGGCAGTTACGATCCGCGTGTCGCCGAACGGGCGAGCGACCTCTATCTGGAAGGGCTTGCGCCCTGGC
TGATCTTCACCGGCCGGAGTGGCCGCGGGACGGACAAGCTCTACAAGGCAAGCGAGGCGGAGGCATTTGCTGAAATCGCC
ATCCGGCGCGGTGTGCCAGAGCGCGCCATCATTATCGAACCCAATGCCACCAATATCGGCGAAAACATCCGTTTTTCGCG
CGAAAAACTGGCGTGGGACGCGGTCAGCGGCATTTTCGTCACCAAGCCCCAGACGCAGCGCCGTGTCCATGCCACCATGC
TTCGGCAATGGCCGGAAGCCAGAGCCAGCATCAGCGCACCGCTTGTCTCTTTTGAAGAACAGCCGACGGCGGAATTTCCG
CTTGAAATGCTGATCCACGAAATGACTGGCGACCTGCAACGCATCCTGGAATATCCGGCCAAGGGCTATCAGATTGCGCA
GGCTGTTCCCCTTGAGGTCATGGAGGCGTATGATTTTCTGATCGAACAGGGTTTCGACGGGCATCCGGTCCGATAG

Upstream 100 bases:

>100_bases
CGAAATTCTGGAAACTCTGCCAGGAGCTTTGCCCGGACACCGAACGCTGCAAGGCATGGCTGAAGCACAATGGCAGCGCA
TTACAGGCAATCGACTTTAC

Downstream 100 bases:

>100_bases
CAACTTGAGTAGCGCCCTGATTTGTGCGACGGAAACCTATGGCCCTTGATATCAAAATATGCGGGTTGAAGACGCCTGAG
GCTGTTGCCGCCGCGCTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKSSILTAAKVLWDYHCIYDPLEGADIIIGLGSYDPRVAERASDLYLEGLAPWLIFTGRSGRGTDKLYKASEAEAFAEIA
IRRGVPERAIIIEPNATNIGENIRFSREKLAWDAVSGIFVTKPQTQRRVHATMLRQWPEARASISAPLVSFEEQPTAEFP
LEMLIHEMTGDLQRILEYPAKGYQIAQAVPLEVMEAYDFLIEQGFDGHPVR

Sequences:

>Translated_211_residues
MKSSILTAAKVLWDYHCIYDPLEGADIIIGLGSYDPRVAERASDLYLEGLAPWLIFTGRSGRGTDKLYKASEAEAFAEIA
IRRGVPERAIIIEPNATNIGENIRFSREKLAWDAVSGIFVTKPQTQRRVHATMLRQWPEARASISAPLVSFEEQPTAEFP
LEMLIHEMTGDLQRILEYPAKGYQIAQAVPLEVMEAYDFLIEQGFDGHPVR
>Mature_211_residues
MKSSILTAAKVLWDYHCIYDPLEGADIIIGLGSYDPRVAERASDLYLEGLAPWLIFTGRSGRGTDKLYKASEAEAFAEIA
IRRGVPERAIIIEPNATNIGENIRFSREKLAWDAVSGIFVTKPQTQRRVHATMLRQWPEARASISAPLVSFEEQPTAEFP
LEMLIHEMTGDLQRILEYPAKGYQIAQAVPLEVMEAYDFLIEQGFDGHPVR

Specific function: The imp locus inhibits the extrachromosomal maintenance of the streptomyces plasmid SLP1. May function as a transcriptional activator [H]

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ydcF [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 23707; Mature: 23707

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSILTAAKVLWDYHCIYDPLEGADIIIGLGSYDPRVAERASDLYLEGLAPWLIFTGRS
CCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC
GRGTDKLYKASEAEAFAEIAIRRGVPERAIIIEPNATNIGENIRFSREKLAWDAVSGIFV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEE
TKPQTQRRVHATMLRQWPEARASISAPLVSFEEQPTAEFPLEMLIHEMTGDLQRILEYPA
ECCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
KGYQIAQAVPLEVMEAYDFLIEQGFDGHPVR
CCEEHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKSSILTAAKVLWDYHCIYDPLEGADIIIGLGSYDPRVAERASDLYLEGLAPWLIFTGRS
CCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC
GRGTDKLYKASEAEAFAEIAIRRGVPERAIIIEPNATNIGENIRFSREKLAWDAVSGIFV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEE
TKPQTQRRVHATMLRQWPEARASISAPLVSFEEQPTAEFPLEMLIHEMTGDLQRILEYPA
ECCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
KGYQIAQAVPLEVMEAYDFLIEQGFDGHPVR
CCEEHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2770697; 12000953 [H]