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The map label for this gene is xerD [H]

Identifier: 225853465

GI number: 225853465

Start: 1973985

End: 1974908

Strand: Direct

Name: xerD [H]

Synonym: BMEA_A2091

Alternate gene names: 225853465

Gene position: 1973985-1974908 (Clockwise)

Preceding gene: 225853464

Following gene: 225853466

Centisome position: 92.86

GC content: 59.63

Gene sequence:

>924_bases
ATGCGCGCTTCACTGGCAATCGAGAATTTTCTGGAAATGATGAGCGCCGAACGCGGCGCGGCACAAAATACGCTCGAATC
CTACCGGCGTGACCTTGAAGCCGCCGCCGAAGAGCTTGCCGCAAAAGGCGTGAACCTTGCCGAAGCGGAAACCGGGCATA
TACGCATGACCCTCGACACCATGGCAGCACAGGGTTTTGCCCCGACCTCGCAGGCGCGCCGCCTTTCCGCCTTGCGCCAG
TTTTTTCGCTTTCTCTATTCGGAAGGTTTCCGGCAGGACGATCCGACCGGCATCCTTTATGCGCCGAAAAAACAAAAGCC
CCTGCCCAAGATCATGAGCGTCGAAAATGTCGGCAAACTGCTCGACCGGGCTGCACTTGAAGCCAATGAGGCGGCGGAGC
CGGGCGAACGCATCAAGGCATTGCGCCTGCACGCCCTTCTGGAAACGCTCTATGCGACGGGCTTGCGCGTGTCGGAACTT
GTCGGCCTGCCCGTCACCGTGGCGCGCACCGACCACCGCTTTTTGCTGGTGCGCGGCAAGGGCTCGAAGGATCGCATGGT
GCCCCTTTCCCGGAAAGCGCGCGATGCCTTGCAAAAATTTCTGACCCTGCGCGATTCCCTGCCCGGCAGCGATGATAATC
CCTGGCTCTTCCCGGCTTTTTCCGAAAGCGGCCATCTGGCGCGGCAGGTTTTCGCGCGTGAATTGAAGGGGCTCGCCGCC
CGGGCAGGGCTTGCTGCTTCCTCAGTCTCTCCGCATGTGCTGCGTCATGCTTTCGCCAGCCATCTTTTGCAGAACGGCGC
AGACCTGCGCACGGTGCAGCAATTGCTTGGCCATGCCGATATTTCGACCACGCAGATCTATACGCATGTGCTGGAGGAAA
GATTGCATAAACTCGTCAGCGAACATCATCCGCTTGCCGATTAG

Upstream 100 bases:

>100_bases
AGCCGGACCAGCACGAAATTGCGGTCGAAATTCCAGCTTCGAGCCTTCATCCCGTTCCCATTGCCCCTGCCGTCCCAGAC
CAGCCATCCAGGGAATGACA

Downstream 100 bases:

>100_bases
CCCGCCTGCGGTTATGAGAAAACCGGAAATTTGCAAGATGAGCCCACAGTGAATATGTAAGGCGCCGTAATACAGCCTTC
TTCATGTCGGCCATAGAGCG

Product: site-specific tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MRASLAIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSALRQ
FFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSEL
VGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAA
RAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLAD

Sequences:

>Translated_307_residues
MRASLAIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSALRQ
FFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSEL
VGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAA
RAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLAD
>Mature_307_residues
MRASLAIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSALRQ
FFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSEL
VGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAA
RAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLAD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=315, Percent_Identity=43.8095238095238, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI1790244, Length=304, Percent_Identity=36.5131578947368, Blast_Score=164, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33926; Mature: 33926

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASLAIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDT
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHH
MAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKL
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
LDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEECCCEEEEEECC
GSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
RAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVS
HHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
EHHPLAD
HCCCCCC
>Mature Secondary Structure
MRASLAIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDT
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHH
MAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKL
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
LDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEECCCEEEEEECC
GSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
RAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVS
HHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
EHHPLAD
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11705955 [H]