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The map label for this gene is yhcM [H]

Identifier: 225853367

GI number: 225853367

Start: 1880022

End: 1881185

Strand: Reverse

Name: yhcM [H]

Synonym: BMEA_A1986

Alternate gene names: 225853367

Gene position: 1881185-1880022 (Counterclockwise)

Preceding gene: 225853368

Following gene: 225853366

Centisome position: 88.5

GC content: 57.56

Gene sequence:

>1164_bases
ATGTCTTTTGATGGCAATCTGAAAGCCTTCCCTTCCGTCCGCGAACGTTATGAAGCCATGGTTGCAGCGGGCGATGTCGA
AACCGACCCCGCCCAGCTTGAACTTACCAGCCGATATGACAGGCTGATCGAGGAGATTTGCTCAAAACGCCTTTCGCGCA
AGTCGAGCGCGCTCGGCTGGCTGTTCGGCAAGCGCAGGGAAACGGCCGCGACCATCAAGGGGCTTTATGTCCACGGTGAG
GTGGGGCGCGGCAAGACCATGCTGATGGACATGTTCTTCCAGCTTTTGCCGGTGGAGCGCAAGCGGCGCGCGCATTTCAA
CGATTTCATGGCCGATGTGCATGAGCGCATTTATGCGCATCGTCAGGCGCACAAGCGCGGTGAAACCAAACAGGATGATC
CAATCCCGCCGGTGGCGGAGGCGCTGAGCCAGCAGGCATGGGTTCTGTGTTTCGATGAATTTACCGTGACCGACATTGCG
GACGCGATGATCCTGTCGCGCCTGTTCAGTGCGCTGTTCTCGCGCGGTGTGGTGCTGGTCGCGACCTCGAACGTCGCGCC
GGACAATCTCTACCGCGACGGGTTGAACCGTCAGCTTTTCCTGCCTTTCATCGACATTCTCAAGAGCCATGTCGATGTCA
TCAATCTCGATTCGCGCACGGATTACCGTCTGGAAAAGCTTGACCGCCAGCCGGTCTATCTTTCCCCGCTGGGGCCTGAA
ACCGAGTGCCGCATGGATGCGGCCTGGGCGGCACACAAGAACGGTGCGGAAGAAAAGCCTGACGTGATCCATATCAAGGG
GCGTGATATCGAAGTGCCGCGCGCTGCTGCTGGCGCTGCACGGTTCTCGTTCGATGATCTTTGTGCCAGGCCGCTTGGTG
CATCCGACTATATAGCGATCGCCAACCGCTATCCGACGCTGTTTATCGATAATGTGCCGGTACTGGATTATTCGCGCCGC
AACGAGGCAAAGCGGTTTATTCTGCTGATCGACGTGCTTTACGATCATCATGCGCGGCTGTTCGTTTCGGCTGAGGCGCA
ACCGGAGAAGCTTTATATCGCCAATAGCGGCACGGAGGCTTTTGAGTTCGACCGCACGGCTTCACGTCTTTTCGAGATGC
AGAGCGCGGAATATCTGGATGGGATACCCGAAGGCGTAGCCTGA

Upstream 100 bases:

>100_bases
ACAGGGCGGAGCTTCTTCGGGCAGCTCCACCGAATTTTAAGGCGCACCGCGAATGATTTCGGCAGATGCGCATCAGTCCA
AGGTTTCACTGGAACCTCTC

Downstream 100 bases:

>100_bases
GAGAAATTCAAAATGTAGGCGCAGCCTGCCGGGGCATGGTTCGACGGTCGATGAAGCGGGATGGGGCATCCCTGTCATGG
GCTGGACTTATATATTTCAT

Product: AFG1-family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MSFDGNLKAFPSVRERYEAMVAAGDVETDPAQLELTSRYDRLIEEICSKRLSRKSSALGWLFGKRRETAATIKGLYVHGE
VGRGKTMLMDMFFQLLPVERKRRAHFNDFMADVHERIYAHRQAHKRGETKQDDPIPPVAEALSQQAWVLCFDEFTVTDIA
DAMILSRLFSALFSRGVVLVATSNVAPDNLYRDGLNRQLFLPFIDILKSHVDVINLDSRTDYRLEKLDRQPVYLSPLGPE
TECRMDAAWAAHKNGAEEKPDVIHIKGRDIEVPRAAAGAARFSFDDLCARPLGASDYIAIANRYPTLFIDNVPVLDYSRR
NEAKRFILLIDVLYDHHARLFVSAEAQPEKLYIANSGTEAFEFDRTASRLFEMQSAEYLDGIPEGVA

Sequences:

>Translated_387_residues
MSFDGNLKAFPSVRERYEAMVAAGDVETDPAQLELTSRYDRLIEEICSKRLSRKSSALGWLFGKRRETAATIKGLYVHGE
VGRGKTMLMDMFFQLLPVERKRRAHFNDFMADVHERIYAHRQAHKRGETKQDDPIPPVAEALSQQAWVLCFDEFTVTDIA
DAMILSRLFSALFSRGVVLVATSNVAPDNLYRDGLNRQLFLPFIDILKSHVDVINLDSRTDYRLEKLDRQPVYLSPLGPE
TECRMDAAWAAHKNGAEEKPDVIHIKGRDIEVPRAAAGAARFSFDDLCARPLGASDYIAIANRYPTLFIDNVPVLDYSRR
NEAKRFILLIDVLYDHHARLFVSAEAQPEKLYIANSGTEAFEFDRTASRLFEMQSAEYLDGIPEGVA
>Mature_386_residues
SFDGNLKAFPSVRERYEAMVAAGDVETDPAQLELTSRYDRLIEEICSKRLSRKSSALGWLFGKRRETAATIKGLYVHGEV
GRGKTMLMDMFFQLLPVERKRRAHFNDFMADVHERIYAHRQAHKRGETKQDDPIPPVAEALSQQAWVLCFDEFTVTDIAD
AMILSRLFSALFSRGVVLVATSNVAPDNLYRDGLNRQLFLPFIDILKSHVDVINLDSRTDYRLEKLDRQPVYLSPLGPET
ECRMDAAWAAHKNGAEEKPDVIHIKGRDIEVPRAAAGAARFSFDDLCARPLGASDYIAIANRYPTLFIDNVPVLDYSRRN
EAKRFILLIDVLYDHHARLFVSAEAQPEKLYIANSGTEAFEFDRTASRLFEMQSAEYLDGIPEGVA

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=403, Percent_Identity=35.9801488833747, Blast_Score=258, Evalue=6e-69,
Organism=Escherichia coli, GI1789627, Length=370, Percent_Identity=41.8918918918919, Blast_Score=271, Evalue=4e-74,
Organism=Caenorhabditis elegans, GI17505769, Length=413, Percent_Identity=34.8668280871671, Blast_Score=253, Evalue=1e-67,
Organism=Saccharomyces cerevisiae, GI6320783, Length=396, Percent_Identity=33.0808080808081, Blast_Score=192, Evalue=9e-50,
Organism=Drosophila melanogaster, GI20129913, Length=421, Percent_Identity=34.2042755344418, Blast_Score=222, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43867; Mature: 43736

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDGNLKAFPSVRERYEAMVAAGDVETDPAQLELTSRYDRLIEEICSKRLSRKSSALGW
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHH
LFGKRRETAATIKGLYVHGEVGRGKTMLMDMFFQLLPVERKRRAHFNDFMADVHERIYAH
HHCCCHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RQAHKRGETKQDDPIPPVAEALSQQAWVLCFDEFTVTDIADAMILSRLFSALFSRGVVLV
HHHHHCCCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEE
ATSNVAPDNLYRDGLNRQLFLPFIDILKSHVDVINLDSRTDYRLEKLDRQPVYLSPLGPE
EECCCCCCHHHHHCCCCEEHHHHHHHHHHHCCEEECCCCCCHHHHHCCCCCEEECCCCCC
TECRMDAAWAAHKNGAEEKPDVIHIKGRDIEVPRAAAGAARFSFDDLCARPLGASDYIAI
CHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCHHHHHCCCCCCCCEEEE
ANRYPTLFIDNVPVLDYSRRNEAKRFILLIDVLYDHHARLFVSAEAQPEKLYIANSGTEA
ECCCCEEEECCCCCCCCCCCCCHHHEEEEHHHHHCCCEEEEEEECCCCCEEEEECCCCCH
FEFDRTASRLFEMQSAEYLDGIPEGVA
HHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SFDGNLKAFPSVRERYEAMVAAGDVETDPAQLELTSRYDRLIEEICSKRLSRKSSALGW
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHH
LFGKRRETAATIKGLYVHGEVGRGKTMLMDMFFQLLPVERKRRAHFNDFMADVHERIYAH
HHCCCHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RQAHKRGETKQDDPIPPVAEALSQQAWVLCFDEFTVTDIADAMILSRLFSALFSRGVVLV
HHHHHCCCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEE
ATSNVAPDNLYRDGLNRQLFLPFIDILKSHVDVINLDSRTDYRLEKLDRQPVYLSPLGPE
EECCCCCCHHHHHCCCCEEHHHHHHHHHHHCCEEECCCCCCHHHHHCCCCCEEECCCCCC
TECRMDAAWAAHKNGAEEKPDVIHIKGRDIEVPRAAAGAARFSFDDLCARPLGASDYIAI
CHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCHHHHHCCCCCCCCEEEE
ANRYPTLFIDNVPVLDYSRRNEAKRFILLIDVLYDHHARLFVSAEAQPEKLYIANSGTEA
ECCCCEEEECCCCCCCCCCCCCHHHEEEEHHHHHCCCEEEEEEECCCCCEEEEECCCCCH
FEFDRTASRLFEMQSAEYLDGIPEGVA
HHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]