Click here to switch to the map view.

The map label for this gene is ydfF [H]

Identifier: 225853350

GI number: 225853350

Start: 1864016

End: 1864681

Strand: Direct

Name: ydfF [H]

Synonym: BMEA_A1969

Alternate gene names: 225853350

Gene position: 1864016-1864681 (Clockwise)

Preceding gene: 225853342

Following gene: 225853354

Centisome position: 87.69

GC content: 59.01

Gene sequence:

>666_bases
ATGAAAGAAAGCCCCGATATTACCCGCGTAGCCGCCCTTGTCGCTGATCCCGCTCGCGGCGCGATGCTGATAGCGCTGAT
GGACGGGCGTGCTCTGACTGCAAGCGAACTTGCTGGACGAGGTGGGATCACCAAGCAAACCGCTAGCAGCCACCTCGCCA
AGTTGGTGGATGGCGAAGTGTTGGTCGTCGAGGCGCAGGGGCGTCACCGATACTTTCGTCTGGCTGGCCCCCATGTCGCG
GCTCTGCTTGAGGCATTAATGGTCTTTTCCAGCGATGCCGCGCCACCTGTGCGTACGGGTCCGCGTGATCCCGCGCTGCG
CAAGTCCCGCATCTGTTATGATCATCTGGCGGGTGAAATGGGCGTCAAACTCTTCGAGCGAATGCAAGAAGATCAATGGT
TGGCAGATGATCTGACCGTGACGGATCAAGGCCGCGACAAGCTTTCTCAGATCGGGATCAATCTGGAGGATTTACCCCTC
AGCAACCGTCCACTCTGCCGTGGCTGCCTCGACTGGAGCCAGCGGCACCAGCACCTGGCTGGACGTATGGGGAAGGCAAT
ATTGGATCGCCTGCTCATCTTGTCTTGGGCGCGACGCTTACCGGATTCACGCATCATCAGTTTCAGTCCGGAGGGCGAGC
GGCGTTTTAACGCATGGCTTGGCTAA

Upstream 100 bases:

>100_bases
AATATCATAGGTGATGACACAGGTAATCATAGGTTTGGCCTTTCTCACGGCTCTCCTTCTAGCAATTGCAACATACGAAT
GGTTCGATTACGGTCGAACT

Downstream 100 bases:

>100_bases
AGGCAGCCGCCTCCGCAAAGCGGCCATCTATAGAAGCTTCTTGTTCCAATGATGCCGTTTGAATAGTGCCGCATAATGCT
GATAATGAGTGCCAAATAGC

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MKESPDITRVAALVADPARGAMLIALMDGRALTASELAGRGGITKQTASSHLAKLVDGEVLVVEAQGRHRYFRLAGPHVA
ALLEALMVFSSDAAPPVRTGPRDPALRKSRICYDHLAGEMGVKLFERMQEDQWLADDLTVTDQGRDKLSQIGINLEDLPL
SNRPLCRGCLDWSQRHQHLAGRMGKAILDRLLILSWARRLPDSRIISFSPEGERRFNAWLG

Sequences:

>Translated_221_residues
MKESPDITRVAALVADPARGAMLIALMDGRALTASELAGRGGITKQTASSHLAKLVDGEVLVVEAQGRHRYFRLAGPHVA
ALLEALMVFSSDAAPPVRTGPRDPALRKSRICYDHLAGEMGVKLFERMQEDQWLADDLTVTDQGRDKLSQIGINLEDLPL
SNRPLCRGCLDWSQRHQHLAGRMGKAILDRLLILSWARRLPDSRIISFSPEGERRFNAWLG
>Mature_221_residues
MKESPDITRVAALVADPARGAMLIALMDGRALTASELAGRGGITKQTASSHLAKLVDGEVLVVEAQGRHRYFRLAGPHVA
ALLEALMVFSSDAAPPVRTGPRDPALRKSRICYDHLAGEMGVKLFERMQEDQWLADDLTVTDQGRDKLSQIGINLEDLPL
SNRPLCRGCLDWSQRHQHLAGRMGKAILDRLLILSWARRLPDSRIISFSPEGERRFNAWLG

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 24410; Mature: 24410

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKESPDITRVAALVADPARGAMLIALMDGRALTASELAGRGGITKQTASSHLAKLVDGEV
CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCE
LVVEAQGRHRYFRLAGPHVAALLEALMVFSSDAAPPVRTGPRDPALRKSRICYDHLAGEM
EEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
GVKLFERMQEDQWLADDLTVTDQGRDKLSQIGINLEDLPLSNRPLCRGCLDWSQRHQHLA
HHHHHHHHHHCCCCCCCCEECCCCHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHH
GRMGKAILDRLLILSWARRLPDSRIISFSPEGERRFNAWLG
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCCC
>Mature Secondary Structure
MKESPDITRVAALVADPARGAMLIALMDGRALTASELAGRGGITKQTASSHLAKLVDGEV
CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCE
LVVEAQGRHRYFRLAGPHVAALLEALMVFSSDAAPPVRTGPRDPALRKSRICYDHLAGEM
EEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
GVKLFERMQEDQWLADDLTVTDQGRDKLSQIGINLEDLPLSNRPLCRGCLDWSQRHQHLA
HHHHHHHHHHCCCCCCCCEECCCCHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHH
GRMGKAILDRLLILSWARRLPDSRIISFSPEGERRFNAWLG
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]