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The map label for this gene is rpoH [H]

Identifier: 225853213

GI number: 225853213

Start: 1713908

End: 1714843

Strand: Reverse

Name: rpoH [H]

Synonym: BMEA_A1815

Alternate gene names: 225853213

Gene position: 1714843-1713908 (Counterclockwise)

Preceding gene: 225853215

Following gene: 225853207

Centisome position: 80.67

GC content: 58.55

Gene sequence:

>936_bases
ATGAAGCCGTCATCCATGAGCAGTTCTTCCACAGTTCCAGCCAATCGTATGCCTATGGCGGTTCGCTGTTTCCCCGCCGC
CGCCGCTTCCTCCCAGTCCATGATCCGCAGCGCAATGTCCGCGCCCTATCTGGAGCGCGAGGAAGAGCGCGCGCTCGCCA
TCCGCTGGAAGGAGACGAAGGATCAGGATGCACTGCATCGGATTACATCCGCCCATATGCGGCTGGTCATTTCCATGGCC
GGCCGTTTTCGCAAGTTCAAGCTGCCGATGAGTGATCTCATACAGGAGGGCTATGTCGGGCTTCTGGAAGAGGCGGCGCG
TTTCGATCCCGACCGCGATGTGCGTTTTTCGACCTATGCATCCTGGTGGATTCGTGCCTCCATGCAGGATTATATCCTGC
GCAACTGGTCTATCGTTCGTGGTGGCACAAGCTCGGCGCAGAAAGTACTGTTTTTCAACCTGCGCCGCCTGCGTTCCAAG
CTCGCGCAGACTGACGACAACATGACCAAAGCCGAAATTTATCGGGAGATTTCCGACCAACTTGGTGTTTCTACGAGCGA
TGTCGAGTTCATGGACAGCCGCCTCTCGGGGCCGGACAGTTCGTTATCCGCCCCGATGAACGGCGAGGAGACCGGCGCTT
CCCGGCGTATGGATTTTCTGGTGGACGACCATCCCTTGCAGGATGAGATCGCCGAAAGCTCTATCGATATGGAGCGCCGC
AACCGCTGGCTCACACGCGCGCTCGACACGTTGAACGAGCGCGAATTGCACATTATTCGCGAGCGCCGCCTGGATGATGA
TGGTGTAACGCTGGAGGCGCTGGGCGAGAAGCTTGGCATTTCCAAGGAGCGGGTCCGCCAGATCGAGAGCCGGGCGATGG
AAAAGCTGAAGATCGCGCTTCTCAGCCAGCATGAGCTTGCCGCCTATCAGGCCTGA

Upstream 100 bases:

>100_bases
AAAGAGTTTGGGGCAATATGTTGCCTGGGGCATTCTTTTGGGACTGGCATATCCTTCCACTTAGCGTCCGGAGGGCGTGA
GTCCAGAACAGGAGAACCAG

Downstream 100 bases:

>100_bases
GCCGCCGAAAGGCGGCAGGCGCTGAACGGGGGCAGAAAGGCTCCATGTTCTTACGCATTATCCGATGCATCGAAGCGGGA
TTGGAAATCAATCCGGTGAA

Product: RNA polymerase factor sigma-32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKPSSMSSSSTVPANRMPMAVRCFPAAAASSQSMIRSAMSAPYLEREEERALAIRWKETKDQDALHRITSAHMRLVISMA
GRFRKFKLPMSDLIQEGYVGLLEEAARFDPDRDVRFSTYASWWIRASMQDYILRNWSIVRGGTSSAQKVLFFNLRRLRSK
LAQTDDNMTKAEIYREISDQLGVSTSDVEFMDSRLSGPDSSLSAPMNGEETGASRRMDFLVDDHPLQDEIAESSIDMERR
NRWLTRALDTLNERELHIIRERRLDDDGVTLEALGEKLGISKERVRQIESRAMEKLKIALLSQHELAAYQA

Sequences:

>Translated_311_residues
MKPSSMSSSSTVPANRMPMAVRCFPAAAASSQSMIRSAMSAPYLEREEERALAIRWKETKDQDALHRITSAHMRLVISMA
GRFRKFKLPMSDLIQEGYVGLLEEAARFDPDRDVRFSTYASWWIRASMQDYILRNWSIVRGGTSSAQKVLFFNLRRLRSK
LAQTDDNMTKAEIYREISDQLGVSTSDVEFMDSRLSGPDSSLSAPMNGEETGASRRMDFLVDDHPLQDEIAESSIDMERR
NRWLTRALDTLNERELHIIRERRLDDDGVTLEALGEKLGISKERVRQIESRAMEKLKIALLSQHELAAYQA
>Mature_311_residues
MKPSSMSSSSTVPANRMPMAVRCFPAAAASSQSMIRSAMSAPYLEREEERALAIRWKETKDQDALHRITSAHMRLVISMA
GRFRKFKLPMSDLIQEGYVGLLEEAARFDPDRDVRFSTYASWWIRASMQDYILRNWSIVRGGTSSAQKVLFFNLRRLRSK
LAQTDDNMTKAEIYREISDQLGVSTSDVEFMDSRLSGPDSSLSAPMNGEETGASRRMDFLVDDHPLQDEIAESSIDMERR
NRWLTRALDTLNERELHIIRERRLDDDGVTLEALGEKLGISKERVRQIESRAMEKLKIALLSQHELAAYQA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. Sigma-32 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789871, Length=278, Percent_Identity=35.9712230215827, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1789098, Length=265, Percent_Identity=31.3207547169811, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1789448, Length=246, Percent_Identity=28.4552845528455, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012759
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 35515; Mature: 35515

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSSMSSSSTVPANRMPMAVRCFPAAAASSQSMIRSAMSAPYLEREEERALAIRWKETK
CCCCCCCCCCCCCCCCCCEEEEECCHHHCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
DQDALHRITSAHMRLVISMAGRFRKFKLPMSDLIQEGYVGLLEEAARFDPDRDVRFSTYA
CHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
SWWIRASMQDYILRNWSIVRGGTSSAQKVLFFNLRRLRSKLAQTDDNMTKAEIYREISDQ
HHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LGVSTSDVEFMDSRLSGPDSSLSAPMNGEETGASRRMDFLVDDHPLQDEIAESSIDMERR
HCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCHHHEECCCCCHHHHHHHHCCHHHH
NRWLTRALDTLNERELHIIRERRLDDDGVTLEALGEKLGISKERVRQIESRAMEKLKIAL
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LSQHELAAYQA
HHHHHHHHCCC
>Mature Secondary Structure
MKPSSMSSSSTVPANRMPMAVRCFPAAAASSQSMIRSAMSAPYLEREEERALAIRWKETK
CCCCCCCCCCCCCCCCCCEEEEECCHHHCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
DQDALHRITSAHMRLVISMAGRFRKFKLPMSDLIQEGYVGLLEEAARFDPDRDVRFSTYA
CHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
SWWIRASMQDYILRNWSIVRGGTSSAQKVLFFNLRRLRSKLAQTDDNMTKAEIYREISDQ
HHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LGVSTSDVEFMDSRLSGPDSSLSAPMNGEETGASRRMDFLVDDHPLQDEIAESSIDMERR
HCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCHHHEECCCCCHHHHHHHHCCHHHH
NRWLTRALDTLNERELHIIRERRLDDDGVTLEALGEKLGISKERVRQIESRAMEKLKIAL
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LSQHELAAYQA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7501460 [H]