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The map label for this gene is ydfH [C]

Identifier: 225853173

GI number: 225853173

Start: 1678631

End: 1679323

Strand: Direct

Name: ydfH [C]

Synonym: BMEA_A1770

Alternate gene names: 225853173

Gene position: 1678631-1679323 (Clockwise)

Preceding gene: 225853171

Following gene: 225853174

Centisome position: 78.97

GC content: 64.07

Gene sequence:

>693_bases
ATGAATCAGAATGTCCCAGCCTCCCGGCCCGCTCCCCGGAGCGAAACAATTGCCGCCCGCATAAGCCGCATTCTCGCGGA
TCGTATCATTGCGGGCGAGATCGAGCCCGGCACCAAACTGCGCCAGGATCATATTGCCGAGGAATTCCAGACCAGCCATG
TGCCGGTGCGTGAAGCCTTCCGGCGGCTGGAGGCACAGGGCCTCGCCGTTTCCGAACCGCGGCGCGGCGTACGCGTTGCC
TCCTTCGACATTGGCGAAATTCGCGAAGTGGCCGAAATGCGCGCCGCGCTTGAGGTGCTTGCACTGCGCCATGCGGCCCC
CCACATCACCCGTGCCGTGCTGGATGCCGCCGAACAGGCCACGCTGGAGGGCGACAAGTCCCGCGATGTGCGCAGTTGGG
AAGATGCGAACCGGCGCTTCCACCGTCTCATTCTCACCCCCTGCAAGATGCCGCGCCTGCTCGCCGCCATCGACGATCTT
CATGCGGCAAGCGCCCGTTTTCTCTTCGCCACCTGGCGCTCGGCATGGGAAGCACGCACCGACCACGACCACCGCGCAAT
CCTCGCCGCACTGCGACAAAACGATATTGAAAGTGCGGCCACCATTCTCGCCCGCCATGTGCAATGGATCGGCCATCGCC
CGGTCAAGACGGCTTCGGGAAAGGTGCGCGATTCCTTCGCCATTGTGGGGTAG

Upstream 100 bases:

>100_bases
GAGCCTCATTCGTCCAGCAAAAGCACAGTTTCACCGTATAAGCTGTCAATAAAATCAATATTGCTCGACCGCCGGGGCAA
AGAACATTATCTATAAAACC

Downstream 100 bases:

>100_bases
GAAATGCGCCGCCTCGCCTTATCCAGACGATAATCAAGGCTGGAATTTTCCCGAAATAGAACATAATTTATCTCTTCCAG
AATTTCCCTCTTGCCAAAGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; GntR-Family Transcriptional Regulator; Transcription Regulator; GntR Family Regulatory; Transcriptional Regulator Gntr Family; FCD Domain Protein; GntR Family Transcription Regulator Protein; GntR Domain-Containing Protein; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; Regulatory Protein GntR HTHGntR C-; Biotin Regulatory Protein BioR; Transcription Regulator Protein; GntR Domain Protein; Transcriptional Regulator Protein; Regulator PutR For Proline Utilization GntR Family; Glycosyltransferase; Transcription Regulator AsnC; Regulatory Protein GntR HTH

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MNQNVPASRPAPRSETIAARISRILADRIIAGEIEPGTKLRQDHIAEEFQTSHVPVREAFRRLEAQGLAVSEPRRGVRVA
SFDIGEIREVAEMRAALEVLALRHAAPHITRAVLDAAEQATLEGDKSRDVRSWEDANRRFHRLILTPCKMPRLLAAIDDL
HAASARFLFATWRSAWEARTDHDHRAILAALRQNDIESAATILARHVQWIGHRPVKTASGKVRDSFAIVG

Sequences:

>Translated_230_residues
MNQNVPASRPAPRSETIAARISRILADRIIAGEIEPGTKLRQDHIAEEFQTSHVPVREAFRRLEAQGLAVSEPRRGVRVA
SFDIGEIREVAEMRAALEVLALRHAAPHITRAVLDAAEQATLEGDKSRDVRSWEDANRRFHRLILTPCKMPRLLAAIDDL
HAASARFLFATWRSAWEARTDHDHRAILAALRQNDIESAATILARHVQWIGHRPVKTASGKVRDSFAIVG
>Mature_230_residues
MNQNVPASRPAPRSETIAARISRILADRIIAGEIEPGTKLRQDHIAEEFQTSHVPVREAFRRLEAQGLAVSEPRRGVRVA
SFDIGEIREVAEMRAALEVLALRHAAPHITRAVLDAAEQATLEGDKSRDVRSWEDANRRFHRLILTPCKMPRLLAAIDDL
HAASARFLFATWRSAWEARTDHDHRAILAALRQNDIESAATILARHVQWIGHRPVKTASGKVRDSFAIVG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=213, Percent_Identity=26.2910798122066, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25710; Mature: 25710

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQNVPASRPAPRSETIAARISRILADRIIAGEIEPGTKLRQDHIAEEFQTSHVPVREAF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
RRLEAQGLAVSEPRRGVRVASFDIGEIREVAEMRAALEVLALRHAAPHITRAVLDAAEQA
HHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLEGDKSRDVRSWEDANRRFHRLILTPCKMPRLLAAIDDLHAASARFLFATWRSAWEART
HCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DHDHRAILAALRQNDIESAATILARHVQWIGHRPVKTASGKVRDSFAIVG
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure
MNQNVPASRPAPRSETIAARISRILADRIIAGEIEPGTKLRQDHIAEEFQTSHVPVREAF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
RRLEAQGLAVSEPRRGVRVASFDIGEIREVAEMRAALEVLALRHAAPHITRAVLDAAEQA
HHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLEGDKSRDVRSWEDANRRFHRLILTPCKMPRLLAAIDDLHAASARFLFATWRSAWEART
HCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DHDHRAILAALRQNDIESAATILARHVQWIGHRPVKTASGKVRDSFAIVG
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA