Click here to switch to the map view.

The map label for this gene is yocS [H]

Identifier: 225853144

GI number: 225853144

Start: 1650032

End: 1650988

Strand: Reverse

Name: yocS [H]

Synonym: BMEA_A1741

Alternate gene names: 225853144

Gene position: 1650988-1650032 (Counterclockwise)

Preceding gene: 225853145

Following gene: 225853143

Centisome position: 77.67

GC content: 59.46

Gene sequence:

>957_bases
ATGAAAGCTATTGCCGCTTTTTCTGATTTTGTAGGGCGCAGTTTTGCCATATGGGTCATTGTTTTTGCCGCGCTGGGCTT
TGTCATGCCGGCAACGTTCAGCATCTTTGCGCCCTGGATCGTGGTTCTGCTAGGCATCATCATGTTCGGCATGGGCCTGA
CGATTTCGGGCAAGGATTTTGCTGAAGTTGCCAAAAGGCCGTTTGATGTCGCCATCGGTGTGCTGGCGCAGTTCATCATC
ATGCCGCTTCTTGCCGTGCTTCTGACCCGAATCATTCCCATGTCGCCGGAGGTCGCGGCGGGTGTGATTCTCGTTGGCTG
CTGCCCCGGCGGCACGGCCTCCAATGTCATGACCTATCCGTCGAAGGGCGATGTGGCGCTCAGCGTTGCCTGCACCAGCG
TTACCACGCTACTCGCACCGCTGGTCACGCCTTTCCTCGTCTGGTTCTTCGCCAGCCAGTATCTGCCGGTCGATGCGATG
AGCATGTTCATCAGCATCGTGAAGGTGATCCTCGTGCCGCTGGCGCTCGGTTTCGTTCTCCAGAAGCTCGTGCCGGGCGT
GGTCAAGGCTGCGGTGCCCATGCTGCCGCTGGTGTCGGTGGTCGGGATCGTGCTGATCGTCGCCGCCGTTGTTGCGGTCA
ACAAGGCCGCTATCGCACAGTCGGGCCTGCTGATCTTCGCGGTTGTCGTCCTGCATAATTGCTGCGGGTTGCTTCTTGGC
TATTTCGCGGCCCGTTTCGCGGGGCTTTCGCTTGCCAAGCGCAAGGCAATCAGCATCGAGGTCGGCATGCAGAACAGCGG
GCTGGGGGCTGCGCTCGCCAATGCGCATTTCTCGCCGCTTGCCGCGGTGCCGAGCGCCGTTTTCAGCGTCTGGCACAATA
TTTCCGGTGCGCTGGTCGCAAGCTATTATGCGCGCATGGACGATGATGCTTCCGAAACGCAGACGTCCGCGCAATAA

Upstream 100 bases:

>100_bases
CTTGCGGGCAACTTCAAATATTTTCATTTTAAAAGGCCGGATTGGGTTAAAGAGCGGATTAAGCTATTAAACATTGCGCG
CGTTTTGAAAGGGGAGGGAC

Downstream 100 bases:

>100_bases
GGAAATTCTACCCGCCTGGAGCAATCCGGGCGGGTTTCGTTAAAATATTCCACGAATGGCGTATTGAGGAAAAGCGCGCT
TTCGGCTATCCCGGTAAGTG

Product: bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDFAEVAKRPFDVAIGVLAQFII
MPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYPSKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAM
SMFISIVKVILVPLALGFVLQKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
YFAARFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVASYYARMDDDASETQTSAQ

Sequences:

>Translated_318_residues
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDFAEVAKRPFDVAIGVLAQFII
MPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYPSKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAM
SMFISIVKVILVPLALGFVLQKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
YFAARFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVASYYARMDDDASETQTSAQ
>Mature_318_residues
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDFAEVAKRPFDVAIGVLAQFII
MPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYPSKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAM
SMFISIVKVILVPLALGFVLQKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
YFAARFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVASYYARMDDDASETQTSAQ

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=250, Percent_Identity=32.4, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI37537552, Length=289, Percent_Identity=25.9515570934256, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI4506971, Length=265, Percent_Identity=29.0566037735849, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI58219066, Length=240, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI24308414, Length=248, Percent_Identity=28.2258064516129, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33137; Mature: 33137

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDF
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AEVAKRPFDVAIGVLAQFIIMPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYP
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCCCCCEEECC
SKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAMSMFISIVKVILVPLALGFVL
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YFAARFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVA
HHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH
SYYARMDDDASETQTSAQ
HHHHHCCCCHHHHHCCCC
>Mature Secondary Structure
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDF
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AEVAKRPFDVAIGVLAQFIIMPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYP
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCCCCCEEECC
SKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAMSMFISIVKVILVPLALGFVL
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YFAARFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVA
HHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH
SYYARMDDDASETQTSAQ
HHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]