| Definition | Brucella melitensis ATCC 23457 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_012441 |
| Length | 2,125,701 |
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The map label for this gene is uvrB [H]
Identifier: 225852990
GI number: 225852990
Start: 1484984
End: 1487806
Strand: Direct
Name: uvrB [H]
Synonym: BMEA_A1563
Alternate gene names: 225852990
Gene position: 1484984-1487806 (Clockwise)
Preceding gene: 225852988
Following gene: 225852991
Centisome position: 69.86
GC content: 60.33
Gene sequence:
>2823_bases ATGGCTTCCTCAAAAGACAAACATATCCGGGATTCGCGCAACAAGGCTGACGGCTTCGGCGAAGCGCCGCAGGCCGGGTT TTCCGGCGCGCCTTTGTCCGGCACTATCGCGGACTGGGCAAAGGAAATCGGCGACGAGGCTGCAAAACCACGCGCAAAGA ACCCCAAACAGCCGAAGAAAATTCCCGAGCGCAGCAAGGAAGCCTCGCGCACGGGACGCGGCACGTCCATGGGCGGCGCG GCTTCCGCCAAGGAGCGCACAGCCGCTGGCCTCAACCCCGTAGCAGGCCTTGATATCAGTCTCGAAGAGGCTGCGGGCCT CAGCCCATCCGGTGCGACCGCAACCGTGCAGGCGCTGGCCGACCTGATCCAGTCGGGCAATCCGCTGTTCAAACATGGCG AGCTGTGGACGCCGCACCGCCCTGCCCGCCCGGAAAAATCCGAAGGCGGCATTCCGATCCGCATGGAAACGAGTTTCGAG CCGTCAGGCGACCAGCCGACGGCCATTCGTGACCTCGTGGAAGGTTTGGAAAATCAGGACCGTACGCAGGTTTTGCTCGG CGTGACAGGTTCCGGCAAGACCTTCACCATGGCCCAGGTGATCGAAAAGACGCAGCGCCCGGCGCTGATTCTGGCGCCGA ACAAGACACTGGCCGCGCAGCTATATGGCGAGTTCAAAAGCTTCTTTCCGAACAATGCGGTGGAATATTTCGTTTCCTAT TACGATTATTACCAGCCGGAAGCCTATGTGCCGCGCTCGGACACCTATATCGAGAAGGAATCGTCGATCAACGAGCAGAT CGACCGTATGCGCCACTCGGCCACCCGTGCGCTGCTCGAACGCGACGATGTGATTATCGTCGCCTCCGTATCGTGCATCT ACGGTATCGGCTCGGTCGAAACCTATACGGCCATGACCTTTGAAATGAAGATCGGCGACCGGCTCGACCAGCGGCAATTG CTCGCCGATCTCGTGGCGCAGCAATATAAGCGCCAGGATATCAACTTCGTGCGTGGTTCTTTCCGCGTGCGCGGTGACAC GATCGAAATATTCCCTGCCCACCTGGAAGACCGCGCCTGGCGCATCTCGCTGTTCGGTGATGAAATCGAAACCATTACCG AGTTCGATCCGCTGACCGGCCAGAAAACCGGCGACCTGAAATCGGTCAAGATTTACGCAAATTCGCACTATGTCACACCG CGCCCGACGCTCAATCAGGCCATCAAATCAATCAAGGAGGAGCTGAAACACCGCCTTGATGAACTGACCCGCGCAGGCCG CCTGCTGGAAGCCCAGCGCCTTGACCAGCGCACGACTTTCGATCTGGAAATGCTGGAAGCAACCGGCTCCTGCGCAGGCA TCGAAAATTATTCGCGCTATCTCACGGGCCGCAAACCCGGCGAGCCGCCGCCGACCCTGTTTGAATATATTCCCGACAAT GCGCTGGTTTTCATCGATGAAAGCCACGTCACGGTTCCGCAGATCGGCGGCATGTATCGCGGCGACTTCCGCCGCAAGGC GACGCTTGCCGAATATGGTTTCCGCCTGCCCTCCTGCATGGACAACCGCCCGCTCCGCTTCGAGGAATGGGACGCCATGC GCCCGCAGACCATCGCCGTTTCGGCAACGCCCGGAAACTGGGAGATGGAGGAAGCGGGCGGCGTCTTCGCAGAACAGGTC ATCCGCCCGACCGGCCTCATCGACCCGCCGGTCGAAATCCGTCCTGCCAAGACGCAGGTGGACGATGTTCTGGGCGAAAT CCGCGATACGGCGAAGAAGGGCTATCGCACGCTCGTCACCGTGCTGACCAAACGCATGGCGGAAGACCTTACCGAATATC TGCACGAACAAGGCGTGCGCGTGCGCTATATGCACTCGGATATCGACACGCTGGAGCGCATCGAAATCATTCGCGACCTG CGGCTTGGCGCTTTCGACGTGCTGGTCGGCATCAACCTTCTGCGCGAAGGGCTCGACATTCCCGAATGCGGTTTCGTCGC CATTCTCGATGCCGACAAGGAAGGCTTCCTGCGTTCCGAAACCTCGCTTATCCAGACGATCGGCCGCGCCGCGCGTAATG TGGACGGCAAGGTCATTCTCTATGCGGATAACATGACCGGCTCGATGCAGCGCGCGATCGACGAAACGAATCGCCGCCGC GAAAAGCAGCAGGCCTACAACGAGGCGCATGGCATCACGCCTGCTTCCGTGAAGAAAAACATCTCGGATATTCTCGATTC GGTCTATGAACGCGACCATGTGCGCGCCGATATTTCCGGCTTTGCCGAAGAAGGCGCGATGATGGGCAACAATCTGGCCT CCCATGTCGAATATCTGGAAAAGCAGATGCGCGATGCGGCTGCCGATCTGGACTTCGAGAAGGCTGCGCGCCTGCGCGAC GAAATCAAACGCCTGCGCGAAACCGAGCTTGCGATTGCGGACGACCCGATGGCGCGTGAGGTGGAACTGGAAAGCCCCGT TACGGGGCGGACCAAAGGTCGCCACAATGCGGGCCGCAAGATGCATCGCGTGGTTACGGATGACGAAGGCGGCAAGTCTT TGTTCCAGAAGCCATCGCTCGACAATATGGGACCGGGAACGGATATGGCGAAGCCCCGCCATGACGGCCGGCTTCCGACA GCCGCGGAAAGCAGGTTCCGCAAGAACACGCTGGATGAAATGACCGTGAAACGCACCGAGATCCCGGCGGGCGGCGAGGC GCCCATCCGGCGCGAACGGGCTGGCATCGGCTCATATGAAGATCCGGCGGAGGTCTCCCGCAAGAAGCGTCGCCCCGGCA AGACAGGCCGGCCGGGGCGTTAG
Upstream 100 bases:
>100_bases GACAGCCTTCTGTCAGGAGCATCGCCGGATTGGAAAAGGGTGAAGGGGATTTCGCTTCCACACTCTTTTCATTTGAACGC TGAAATTCCATATTGGGAGC
Downstream 100 bases:
>100_bases GCTGAGGTGACGCTATCCACGCCCTGAAAAGGCTCAATCGCCGCGCGGGCTTGAACAAAACCGCCGGAACCATATCGACA TGCGGTAAACTTGCGTTACC
Product: excinuclease ABC subunit B
Products: NA
Alternate protein names: Protein uvrB; Excinuclease ABC subunit B [H]
Number of amino acids: Translated: 940; Mature: 939
Protein sequence:
>940_residues MASSKDKHIRDSRNKADGFGEAPQAGFSGAPLSGTIADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGA ASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPIRMETSFE PSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQL LADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTP RPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQV IRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDL RLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRD EIKRLRETELAIADDPMAREVELESPVTGRTKGRHNAGRKMHRVVTDDEGGKSLFQKPSLDNMGPGTDMAKPRHDGRLPT AAESRFRKNTLDEMTVKRTEIPAGGEAPIRRERAGIGSYEDPAEVSRKKRRPGKTGRPGR
Sequences:
>Translated_940_residues MASSKDKHIRDSRNKADGFGEAPQAGFSGAPLSGTIADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGA ASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPIRMETSFE PSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQL LADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTP RPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQV IRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDL RLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRD EIKRLRETELAIADDPMAREVELESPVTGRTKGRHNAGRKMHRVVTDDEGGKSLFQKPSLDNMGPGTDMAKPRHDGRLPT AAESRFRKNTLDEMTVKRTEIPAGGEAPIRRERAGIGSYEDPAEVSRKKRRPGKTGRPGR >Mature_939_residues ASSKDKHIRDSRNKADGFGEAPQAGFSGAPLSGTIADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAA SAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPIRMETSFEP SGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSYY DYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLL ADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPR PTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDNA LVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVI RPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLR LGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRRE KQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDE IKRLRETELAIADDPMAREVELESPVTGRTKGRHNAGRKMHRVVTDDEGGKSLFQKPSLDNMGPGTDMAKPRHDGRLPTA AESRFRKNTLDEMTVKRTEIPAGGEAPIRRERAGIGSYEDPAEVSRKKRRPGKTGRPGR
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA
COG id: COG0556
COG function: function code L; Helicase subunit of the DNA excision repair complex
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 UVR domain [H]
Homologues:
Organism=Escherichia coli, GI1786996, Length=677, Percent_Identity=60.5612998522895, Blast_Score=808, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR001943 - InterPro: IPR004807 - InterPro: IPR009055 [H]
Pfam domain/function: PF00271 Helicase_C; PF04851 ResIII; PF02151 UVR [H]
EC number: NA
Molecular weight: Translated: 104717; Mature: 104586
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: PS50151 UVR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSKDKHIRDSRNKADGFGEAPQAGFSGAPLSGTIADWAKEIGDEAAKPRAKNPKQPKK CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH IPERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALA CHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEHHHHCCCCCCCCHHHHHHHH DLIQSGNPLFKHGELWTPHRPARPEKSEGGIPIRMETSFEPSGDQPTAIRDLVEGLENQD HHHHCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCC RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY CEEEEEEECCCCCEEHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHH YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCC TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCCEE RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD EEEEECCHHHHHHHCCCCCCCCCCCCEEEEEEECCEECCCCCHHHHHHHHHHHHHHHHHH ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCC ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV EEEEEECCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT EECCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH KQMRDAAADLDFEKAARLRDEIKRLRETELAIADDPMAREVELESPVTGRTKGRHNAGRK HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCCCCCCCCCCHHHHH MHRVVTDDEGGKSLFQKPSLDNMGPGTDMAKPRHDGRLPTAAESRFRKNTLDEMTVKRTE HHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC IPAGGEAPIRRERAGIGSYEDPAEVSRKKRRPGKTGRPGR CCCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure ASSKDKHIRDSRNKADGFGEAPQAGFSGAPLSGTIADWAKEIGDEAAKPRAKNPKQPKK CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH IPERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALA CHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEHHHHCCCCCCCCHHHHHHHH DLIQSGNPLFKHGELWTPHRPARPEKSEGGIPIRMETSFEPSGDQPTAIRDLVEGLENQD HHHHCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCC RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY CEEEEEEECCCCCEEHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHH YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCC TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCCEE RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD EEEEECCHHHHHHHCCCCCCCCCCCCEEEEEEECCEECCCCCHHHHHHHHHHHHHHHHHH ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCC ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV EEEEEECCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT EECCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH KQMRDAAADLDFEKAARLRDEIKRLRETELAIADDPMAREVELESPVTGRTKGRHNAGRK HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCCCCCCCCCCHHHHH MHRVVTDDEGGKSLFQKPSLDNMGPGTDMAKPRHDGRLPTAAESRFRKNTLDEMTVKRTE HHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC IPAGGEAPIRRERAGIGSYEDPAEVSRKKRRPGKTGRPGR CCCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]