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The map label for this gene is 225852898

Identifier: 225852898

GI number: 225852898

Start: 1389899

End: 1390489

Strand: Direct

Name: 225852898

Synonym: BMEA_A1464

Alternate gene names: NA

Gene position: 1389899-1390489 (Clockwise)

Preceding gene: 225852895

Following gene: 225852899

Centisome position: 65.39

GC content: 55.5

Gene sequence:

>591_bases
ATGAAAAAGTTTCTGCCCATCTTCATCGTCGTCTTCATAATCGTCATTATTGGCGCGGCGGGCTTCAATTTCGTCCGCGA
CAAGCAGGCGGCAAAGGAACCCTTTGGCGGCTCGTTCAATCTGGTCACGATGGATGGGAAGCCCTTCAGCGAAAAAGATC
TGCGCGCGACGCCCGCAGTCGTCTTCTTCGGCTTCACCCATTGTCCGGACGTCTGCCCGACAACCCTCTACGAGCTTGAT
GGCTGGCTGAAGCAGCTTGGACCGGAAGCAGGCGATATCAAGGCCTATTTCGTGACCGTCGATCCTGAGCGCGACACGCA
GGACGTCATGAACACCTATGTCAGCAATGTCACCGACCGCATCATGGGCATCACCGGCACACCGGACAATATCGCCGAAA
TGGTAAAATCCTATCATGTCTATGCCAGGAAAGTTCCCATCGAGGACGGCGACTATACGATGGATCACACGGCCTCGATC
TTCCTGCTCGACAAGGGGGGGCGTTTCCGCGGCACCATCGCCTATCAGGAGAACCCGGATACGGCTCTGGAAAAGTTGAA
GAATCTGGCAAAAGGCCCCGCGAAGGGTTAA

Upstream 100 bases:

>100_bases
GCGCCTGAATATGCGTTTCCTTGCCGCAGATCAGTGATACTTCCGGCTTTTGCCCATATATGAAGTGATATTGTTAAGTG
AAATTCAAGGCTGACTGGAC

Downstream 100 bases:

>100_bases
AGAGTAGCTCCTGAACACACAGAGAGCTATTTACCTCATGGCCCAGTCACGACTTTTCTTTTCGGCAGACAAGGCGGAAG
CCGAGCGCACCTACAATATT

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKKFLPIFIVVFIIVIIGAAGFNFVRDKQAAKEPFGGSFNLVTMDGKPFSEKDLRATPAVVFFGFTHCPDVCPTTLYELD
GWLKQLGPEAGDIKAYFVTVDPERDTQDVMNTYVSNVTDRIMGITGTPDNIAEMVKSYHVYARKVPIEDGDYTMDHTASI
FLLDKGGRFRGTIAYQENPDTALEKLKNLAKGPAKG

Sequences:

>Translated_196_residues
MKKFLPIFIVVFIIVIIGAAGFNFVRDKQAAKEPFGGSFNLVTMDGKPFSEKDLRATPAVVFFGFTHCPDVCPTTLYELD
GWLKQLGPEAGDIKAYFVTVDPERDTQDVMNTYVSNVTDRIMGITGTPDNIAEMVKSYHVYARKVPIEDGDYTMDHTASI
FLLDKGGRFRGTIAYQENPDTALEKLKNLAKGPAKG
>Mature_196_residues
MKKFLPIFIVVFIIVIIGAAGFNFVRDKQAAKEPFGGSFNLVTMDGKPFSEKDLRATPAVVFFGFTHCPDVCPTTLYELD
GWLKQLGPEAGDIKAYFVTVDPERDTQDVMNTYVSNVTDRIMGITGTPDNIAEMVKSYHVYARKVPIEDGDYTMDHTASI
FLLDKGGRFRGTIAYQENPDTALEKLKNLAKGPAKG

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=136, Percent_Identity=39.7058823529412, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI281182722, Length=136, Percent_Identity=39.7058823529412, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI281182716, Length=136, Percent_Identity=39.7058823529412, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI153791313, Length=136, Percent_Identity=39.7058823529412, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI4759068, Length=147, Percent_Identity=34.0136054421769, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17531419, Length=149, Percent_Identity=32.2147651006711, Blast_Score=99, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6319498, Length=157, Percent_Identity=36.9426751592357, Blast_Score=117, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6319511, Length=193, Percent_Identity=31.6062176165803, Blast_Score=110, Evalue=2e-25,
Organism=Drosophila melanogaster, GI19920710, Length=197, Percent_Identity=31.4720812182741, Blast_Score=111, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21711; Mature: 21711

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLPIFIVVFIIVIIGAAGFNFVRDKQAAKEPFGGSFNLVTMDGKPFSEKDLRATPAV
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEE
VFFGFTHCPDVCPTTLYELDGWLKQLGPEAGDIKAYFVTVDPERDTQDVMNTYVSNVTDR
EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH
IMGITGTPDNIAEMVKSYHVYARKVPIEDGDYTMDHTASIFLLDKGGRFRGTIAYQENPD
HEECCCCCHHHHHHHHHHHHHHEECCCCCCCEEECCCEEEEEEECCCCEEEEEEECCCCC
TALEKLKNLAKGPAKG
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKFLPIFIVVFIIVIIGAAGFNFVRDKQAAKEPFGGSFNLVTMDGKPFSEKDLRATPAV
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEE
VFFGFTHCPDVCPTTLYELDGWLKQLGPEAGDIKAYFVTVDPERDTQDVMNTYVSNVTDR
EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH
IMGITGTPDNIAEMVKSYHVYARKVPIEDGDYTMDHTASIFLLDKGGRFRGTIAYQENPD
HEECCCCCHHHHHHHHHHHHHHEECCCCCCCEEECCCEEEEEEECCCCEEEEEEECCCCC
TALEKLKNLAKGPAKG
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA