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The map label for this gene is ycfH [H]

Identifier: 225852501

GI number: 225852501

Start: 978636

End: 979427

Strand: Direct

Name: ycfH [H]

Synonym: BMEA_A1037

Alternate gene names: 225852501

Gene position: 978636-979427 (Clockwise)

Preceding gene: 225852500

Following gene: 225852502

Centisome position: 46.04

GC content: 55.81

Gene sequence:

>792_bases
ATGCTTGTCGATAGCCATTGCCACCTCGATTTTGCCGATTTTGAGCCGGAGCGCGATGCTGTTGTTCAGCGCGCGCTCGA
TGCGGGCATCAAGCGCATGGTGACTATTTCCACGCGCGTCCGGAAATTCGATGCGATTCGCACGCTGGCCGAGACTTATG
AAGCGGTCTATTGCTCGGTCGGGACCCATCCGAACAATGCACATGAGGAACTCGACATTACCGCCGATGATCTGGTGCGG
CTTGCCGAACATCCGAAAGTGGTGGCAATAGGCGAGGCGGGCCTCGACTATCATTATGATTATGCGCCGAAGGAAGCCCA
GCAACAGGGTTTTCTCGCCCATATTGATGCTGCGCGCCGCACCCAATTGCCGCTTGTCATCCATGCGCGCAGCGCGGATA
TCGATATGGCCGAAATCCTTGAAAAAGAGACGGAAAAGGGCGCATTCCCCTTTATTCTGCATTGTTTTTCTTCCGGCCGT
GCGCTTGCGGAAAAAGGTATAGAACTGGGCGGCTATATCTCGTTTTCCGGCATTTTGACCTTCAAGAATTCCGCCGATAT
CCGGGAAGTGGCGTCAATCGTGCCGCGTGATCGCCTTCTGGTGGAAACCGACGCACCCTATCTTGCGCCGGTGCCGCATC
GCGGCAAACGCAACGAGCCGTCTTTTGTGCAGCATACGGCGGCCGTGCTGGCTGAAACCATCGGCGTCAGCCCGGAAGAG
ATCGCGGCGATCACCAGCGACAATGTTTTCCGGCTTTTCTCCAAAATGCCAAGACCGGCCGAAGGAATATAA

Upstream 100 bases:

>100_bases
ATGTGCTGGCAAGCCCGCTTGCTGGTGGGACCGATCTGCCTGCGCCGCAGCCGGTCTTCCCGCGCTATGTGGAAGCGGAC
GAACAGAACTGAGTTTGATG

Downstream 100 bases:

>100_bases
ACGTGACTTCTCCCCGCAATTGCCTGCGTTTCACATTGCTTGGCTGCGGCTCGTCGCCGGGCGTGCCGCGCATCAATGGC
GATTGGGGCAAGTGCGATCC

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MLVDSHCHLDFADFEPERDAVVQRALDAGIKRMVTISTRVRKFDAIRTLAETYEAVYCSVGTHPNNAHEELDITADDLVR
LAEHPKVVAIGEAGLDYHYDYAPKEAQQQGFLAHIDAARRTQLPLVIHARSADIDMAEILEKETEKGAFPFILHCFSSGR
ALAEKGIELGGYISFSGILTFKNSADIREVASIVPRDRLLVETDAPYLAPVPHRGKRNEPSFVQHTAAVLAETIGVSPEE
IAAITSDNVFRLFSKMPRPAEGI

Sequences:

>Translated_263_residues
MLVDSHCHLDFADFEPERDAVVQRALDAGIKRMVTISTRVRKFDAIRTLAETYEAVYCSVGTHPNNAHEELDITADDLVR
LAEHPKVVAIGEAGLDYHYDYAPKEAQQQGFLAHIDAARRTQLPLVIHARSADIDMAEILEKETEKGAFPFILHCFSSGR
ALAEKGIELGGYISFSGILTFKNSADIREVASIVPRDRLLVETDAPYLAPVPHRGKRNEPSFVQHTAAVLAETIGVSPEE
IAAITSDNVFRLFSKMPRPAEGI
>Mature_263_residues
MLVDSHCHLDFADFEPERDAVVQRALDAGIKRMVTISTRVRKFDAIRTLAETYEAVYCSVGTHPNNAHEELDITADDLVR
LAEHPKVVAIGEAGLDYHYDYAPKEAQQQGFLAHIDAARRTQLPLVIHARSADIDMAEILEKETEKGAFPFILHCFSSGR
ALAEKGIELGGYISFSGILTFKNSADIREVASIVPRDRLLVETDAPYLAPVPHRGKRNEPSFVQHTAAVLAETIGVSPEE
IAAITSDNVFRLFSKMPRPAEGI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=30.9701492537313, Blast_Score=114, Evalue=7e-26,
Organism=Homo sapiens, GI226061853, Length=274, Percent_Identity=31.7518248175182, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=30.5970149253731, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI226061614, Length=257, Percent_Identity=29.9610894941634, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI14042943, Length=262, Percent_Identity=26.3358778625954, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI225903439, Length=250, Percent_Identity=27.2, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI225903424, Length=270, Percent_Identity=28.1481481481481, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI226061595, Length=228, Percent_Identity=31.5789473684211, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI1787342, Length=258, Percent_Identity=44.9612403100775, Blast_Score=207, Evalue=5e-55,
Organism=Escherichia coli, GI48994985, Length=260, Percent_Identity=31.9230769230769, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI87082439, Length=257, Percent_Identity=31.5175097276265, Blast_Score=132, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17559024, Length=282, Percent_Identity=30.8510638297872, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI71980746, Length=262, Percent_Identity=27.0992366412214, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17565396, Length=297, Percent_Identity=28.6195286195286, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17543026, Length=214, Percent_Identity=29.4392523364486, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24648690, Length=283, Percent_Identity=31.8021201413428, Blast_Score=123, Evalue=2e-28,
Organism=Drosophila melanogaster, GI221330018, Length=222, Percent_Identity=31.0810810810811, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24586117, Length=222, Percent_Identity=31.0810810810811, Blast_Score=93, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29061; Mature: 29061

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVDSHCHLDFADFEPERDAVVQRALDAGIKRMVTISTRVRKFDAIRTLAETYEAVYCSV
CEECCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
GTHPNNAHEELDITADDLVRLAEHPKVVAIGEAGLDYHYDYAPKEAQQQGFLAHIDAARR
CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHCCCEEEECHHHH
TQLPLVIHARSADIDMAEILEKETEKGAFPFILHCFSSGRALAEKGIELGGYISFSGILT
CCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCCCCCCEEEEEEEEE
FKNSADIREVASIVPRDRLLVETDAPYLAPVPHRGKRNEPSFVQHTAAVLAETIGVSPEE
ECCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
IAAITSDNVFRLFSKMPRPAEGI
HHHHCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLVDSHCHLDFADFEPERDAVVQRALDAGIKRMVTISTRVRKFDAIRTLAETYEAVYCSV
CEECCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
GTHPNNAHEELDITADDLVRLAEHPKVVAIGEAGLDYHYDYAPKEAQQQGFLAHIDAARR
CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHCCCEEEECHHHH
TQLPLVIHARSADIDMAEILEKETEKGAFPFILHCFSSGRALAEKGIELGGYISFSGILT
CCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCCCCCCEEEEEEEEE
FKNSADIREVASIVPRDRLLVETDAPYLAPVPHRGKRNEPSFVQHTAAVLAETIGVSPEE
ECCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
IAAITSDNVFRLFSKMPRPAEGI
HHHHCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]