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The map label for this gene is ycbB [H]

Identifier: 225852468

GI number: 225852468

Start: 953516

End: 955048

Strand: Direct

Name: ycbB [H]

Synonym: BMEA_A0997

Alternate gene names: 225852468

Gene position: 953516-955048 (Clockwise)

Preceding gene: 225852467

Following gene: 225852470

Centisome position: 44.86

GC content: 55.58

Gene sequence:

>1533_bases
ATGGGCTATTTGAAATCCATCGACGTAAAGGCCGAAAAGCCGATAGCCGAGGCCCTCGTTGCCTTTTATTCCAGCAATCG
CACCTTCCTCTGGTCGGCAGATGACAAGGTTCTGGACCGTGCGAAACAACTGGCAGCCTTCTTTGCGCGTGCCGACGAGG
ATGGCTTGAACCCGGATGAATATGCGGTAACGATTCCTGCCGATAATTTCGATCCTGACAAGCGCGATGAGCGGCAGCAA
AAACTGGCCGAATTTGAAATCCGCATGTCGGCGCGCGCCCTGCGCTATGCTATCGACGCGGGCGAGGGGCGCATCATTGC
CGACCGGCTGAGCGGTTTCCACGATCTGCCGCGCACACGTGTCAATCCGAAGGCTGTTCTGGAACAACTTGCAAGAGAAT
CCGACCCGAGCGCCTATCTGCACGGTTTCCAGCCCGATAATGCGCAATATGCTGCACTGAAGCGCGCCCTTGCCGATACG
GAACCGCCGCGCGGCAAGCCGATTCGTATTTCGTTCGATGGCGTCATCAAACCCGGCGATAAAAGTGAGCAGCTTTCCAA
GGTTGTCGCCCTGATCTCCCGCCATGCGCCGGCTGACTATCTGGCGCAGCACCGAGATGTGCTTGCCGCCCATGCGGATG
CGAGCGTTTATGATCCCGAACTGGTTTCCGCGATCCAGGATTATCAGAAATTGTCGGGCGGCACACTGGACGGCCTGATC
GGACGGGCGACGATTTCCGCCCTTCAGGGCGAGCAGACGTCAATCAGGCGCGACCGCATCCTCTATTCGATGGAGCGTCT
GCGCTGGTTGCCGCATGATTTCGGCAAACGCTATGTCATGGTCAACCAGCCTGCCTACCATGCCGGATATTATGAGGATG
GCCAGCAAAAGCTCGGGATGAATGTGGTTATCGGCTCGCCGACCCATCAGACCTATTTCTTCTATAACAAGGTTCAAACG
GTCGTATTCAACCCGTCCTGGGGTGTGCCGCGCTCGATCATTCTCAATGAAATGCTGCCAAAGGTCATGCGGGATACGAG
CTATCTCGACCGTAATGGCTATGAGGTCTATGCAAACGGCAAGAAAGTTTCGGCAAGTGCGGTGAACTGGAGTGCGGTTG
CAACGGGCAAGGCCCATATCGGGATCCGCCAGAAGCCGAGCCTCGACAATTCGCTTGGCGAATTGAAGATTCTCTTCCCG
AATGCGCACGATATCTACATGCACGACACGCCTGCAAAATCCTATTTCAAGCGGGATATGCGCGCCTTGAGCCATGGCTG
CATCCGCCTTGAACGTCCTCGCGACATGGCGGCTGCCGTTCTTGGTACATCAGTGAAGAATCTCGACAAATATTTCGGCA
AGGATGAACGCGGCATAAAGGTACCCGAGCCGGTGCCGGTCTATATTGCCTATTTTACGGCATGGCCGGATGCTGACGGC
AAGATTCACTATTACGGTGATATCTATGATCGCGATTCCGGCTTGCAGAAGGCTTTCGACAAAACGGCAACCACACGCCT
GGCAGCCATTTAG

Upstream 100 bases:

>100_bases
AACCGAGCCGGTGTAGATCGATCCCCTGACCTCCGGCATGTCGCCCATTCGCCCACAGGCGAAAAATCAAACGCCAGGCA
AGCGCGCTTTTGATGCGGCG

Downstream 100 bases:

>100_bases
AACGGCTTTAACTAAAACCATCAAAGCGCGTTTCCGTTTGCGATAATGCAGGCAGAAACGCGCTTTTGTTTTTACAGGGC
GATGAGATTGGCTTGTGCCA

Product: peptidoglycan-binding domain 1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MGYLKSIDVKAEKPIAEALVAFYSSNRTFLWSADDKVLDRAKQLAAFFARADEDGLNPDEYAVTIPADNFDPDKRDERQQ
KLAEFEIRMSARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQYAALKRALADT
EPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLAAHADASVYDPELVSAIQDYQKLSGGTLDGLI
GRATISALQGEQTSIRRDRILYSMERLRWLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQT
VVFNPSWGVPRSIILNEMLPKVMRDTSYLDRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGELKILFP
NAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYFGKDERGIKVPEPVPVYIAYFTAWPDADG
KIHYYGDIYDRDSGLQKAFDKTATTRLAAI

Sequences:

>Translated_510_residues
MGYLKSIDVKAEKPIAEALVAFYSSNRTFLWSADDKVLDRAKQLAAFFARADEDGLNPDEYAVTIPADNFDPDKRDERQQ
KLAEFEIRMSARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQYAALKRALADT
EPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLAAHADASVYDPELVSAIQDYQKLSGGTLDGLI
GRATISALQGEQTSIRRDRILYSMERLRWLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQT
VVFNPSWGVPRSIILNEMLPKVMRDTSYLDRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGELKILFP
NAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYFGKDERGIKVPEPVPVYIAYFTAWPDADG
KIHYYGDIYDRDSGLQKAFDKTATTRLAAI
>Mature_509_residues
GYLKSIDVKAEKPIAEALVAFYSSNRTFLWSADDKVLDRAKQLAAFFARADEDGLNPDEYAVTIPADNFDPDKRDERQQK
LAEFEIRMSARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQYAALKRALADTE
PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLAAHADASVYDPELVSAIQDYQKLSGGTLDGLIG
RATISALQGEQTSIRRDRILYSMERLRWLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTV
VFNPSWGVPRSIILNEMLPKVMRDTSYLDRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGELKILFPN
AHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYFGKDERGIKVPEPVPVYIAYFTAWPDADGK
IHYYGDIYDRDSGLQKAFDKTATTRLAAI

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=349, Percent_Identity=34.6704871060172, Blast_Score=180, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 57214; Mature: 57083

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYLKSIDVKAEKPIAEALVAFYSSNRTFLWSADDKVLDRAKQLAAFFARADEDGLNPDE
CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCC
YAVTIPADNFDPDKRDERQQKLAEFEIRMSARALRYAIDAGEGRIIADRLSGFHDLPRTR
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEHHHHCCHHCCCCCC
VNPKAVLEQLARESDPSAYLHGFQPDNAQYAALKRALADTEPPRGKPIRISFDGVIKPGD
CCHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCEECCCC
KSEQLSKVVALISRHAPADYLAQHRDVLAAHADASVYDPELVSAIQDYQKLSGGTLDGLI
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
GRATISALQGEQTSIRRDRILYSMERLRWLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGM
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCCCCCCCCCCCCHHHCCC
NVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIILNEMLPKVMRDTSYLDRNGYEVYANG
EEEECCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
KKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDM
CEEEECCCCEEEEECCCEEECCCCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHH
RALSHGCIRLERPRDMAAAVLGTSVKNLDKYFGKDERGIKVPEPVPVYIAYFTAWPDADG
HHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCC
KIHYYGDIYDRDSGLQKAFDKTATTRLAAI
EEEEEECCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GYLKSIDVKAEKPIAEALVAFYSSNRTFLWSADDKVLDRAKQLAAFFARADEDGLNPDE
CCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCC
YAVTIPADNFDPDKRDERQQKLAEFEIRMSARALRYAIDAGEGRIIADRLSGFHDLPRTR
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEHHHHCCHHCCCCCC
VNPKAVLEQLARESDPSAYLHGFQPDNAQYAALKRALADTEPPRGKPIRISFDGVIKPGD
CCHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCEECCCC
KSEQLSKVVALISRHAPADYLAQHRDVLAAHADASVYDPELVSAIQDYQKLSGGTLDGLI
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
GRATISALQGEQTSIRRDRILYSMERLRWLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGM
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCCCCCCCCCCCCHHHCCC
NVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIILNEMLPKVMRDTSYLDRNGYEVYANG
EEEECCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
KKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDM
CEEEECCCCEEEEECCCEEECCCCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHH
RALSHGCIRLERPRDMAAAVLGTSVKNLDKYFGKDERGIKVPEPVPVYIAYFTAWPDADG
HHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCC
KIHYYGDIYDRDSGLQKAFDKTATTRLAAI
EEEEEECCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]