Click here to switch to the map view.

The map label for this gene is ygeR [C]

Identifier: 225852401

GI number: 225852401

Start: 882422

End: 883720

Strand: Direct

Name: ygeR [C]

Synonym: BMEA_A0927

Alternate gene names: 225852401

Gene position: 882422-883720 (Clockwise)

Preceding gene: 225852400

Following gene: 225852403

Centisome position: 41.51

GC content: 60.59

Gene sequence:

>1299_bases
ATGGACGAGTTGAACATGCGTTTACCAATTTTGCAGCATACGTCCGAACGTCTCCTGCGGAATGTCGCAATCGTTCTGAT
TGCCGGTTTTGGAGCCGGGTGCAGTGCTGATACGATGCGCTTCACAGACGGCATTTTTACTGGTTCTACGTCCAGTCAGC
CCGTCGCGCAGCAACCCGCAGGCAATGTTTATGCGTCTGCCCCCGTGGCTTCGGCCCCGCCGGTTTCAAGCGGAACGGTC
CAGCGCAATTCCTTGCCGCCGGTATCGTCAGCGCCTCTGGGTGCGCCTGTCGCTGCGGCATCGACGCAGATGCGCAATCA
GGTCGATCAAGCCCAGGATATGGCGGCGTCCCGCGTCAATAATACCGTCAATGCCGCTGAAACCAGGGTCGCAAGTGCCG
CCACCGTTACGCATAATACGGTGAATGGCGCGAAGGAAAAGGTTCTTGGCCAGCTTCCGGCGACGGGGCAGGGCGCGCCG
CGCCCGATGGACAACAATATCGCTGGCGTTCCGCAAGCGCCTGCTGTCAACGGCAAGAAATCCTCGCCGACCAATATGGC
ATCGGCTGGCGGCGCTATCGCAACCCCGCCATCAGTGGGCGGTGCCTACGTCGTGAAGAGCGGGGATTCGCTGTTCTCCA
TCGCAAAGAAGCACAATGTCCCTGTCGACCAGTTGAAGGCGGCAAACGGCCTGACCAGTGGCGCCATTCGCGTCGGGCAG
TCGCTCGTTATTCCGTCTGCTGCCGCAGGTGCGCCGACACAGGTGGCCGCAATCACGCCGCAGCCGGCAAACCCGGCCAA
AGCAGCCAGTGCGCCGGCCAATGGAGGTGCAGAGGTAAAGCCTTATACGCCGCCGCAGGCCAGCAACAAGGTAATCGAGG
ATGCGGAAAAGGATCAGGCCGCAGCGCCATCCTCAACCGGCATCTCGCAGATGCGCTGGCCGGTTCGTGGGCGCATTCTG
GCAAGCTTCGGCCAGCGTGAGGGCACCTCGGTCAGCGACGGTATCGATATCATGGTGCCGGAAGGCACGCCGGTCAAAGC
CGCCGAAAACGGTGTTGTGATCTATGCGGGCGATGGTTTGAAGGAATTTGGCCAGACCGTTCTGATCCGCCACGACAATG
GCCTTGTGACCGTCTATGGCCATAACAGCCAGATAATGGTGCAGCGCGGCCAGAAGGTTCGCCGTGGCGAGGAAATCGCC
AAGTCGGGCATGAGCGGCAACGCCAAGTCGCCGAAGCTGCACTTCGAGGTGCGCAAGAACTCGGCGCCGGTCAATCCGAC
CAAATATCTGGAATCATAA

Upstream 100 bases:

>100_bases
CGCTTATGGTGTTTATTTGGTGAATCTTTTTTTAGTTTCGGGGCATTCTTAACCAGAGAGTAACATTAACGCGTTTTAAT
CGTCTTAGTGAGTTTCGAGT

Downstream 100 bases:

>100_bases
CAGTTTCAGCAGGAAAAAATGAAAAAGGCGGGCAGGGGCCCGCCTTTTTCATTGCATGGTTTTTCCAAGCCTGCCTGCCA
GATCCTGAATATATTGCCAC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MDELNMRLPILQHTSERLLRNVAIVLIAGFGAGCSADTMRFTDGIFTGSTSSQPVAQQPAGNVYASAPVASAPPVSSGTV
QRNSLPPVSSAPLGAPVAAASTQMRNQVDQAQDMAASRVNNTVNAAETRVASAATVTHNTVNGAKEKVLGQLPATGQGAP
RPMDNNIAGVPQAPAVNGKKSSPTNMASAGGAIATPPSVGGAYVVKSGDSLFSIAKKHNVPVDQLKAANGLTSGAIRVGQ
SLVIPSAAAGAPTQVAAITPQPANPAKAASAPANGGAEVKPYTPPQASNKVIEDAEKDQAAAPSSTGISQMRWPVRGRIL
ASFGQREGTSVSDGIDIMVPEGTPVKAAENGVVIYAGDGLKEFGQTVLIRHDNGLVTVYGHNSQIMVQRGQKVRRGEEIA
KSGMSGNAKSPKLHFEVRKNSAPVNPTKYLES

Sequences:

>Translated_432_residues
MDELNMRLPILQHTSERLLRNVAIVLIAGFGAGCSADTMRFTDGIFTGSTSSQPVAQQPAGNVYASAPVASAPPVSSGTV
QRNSLPPVSSAPLGAPVAAASTQMRNQVDQAQDMAASRVNNTVNAAETRVASAATVTHNTVNGAKEKVLGQLPATGQGAP
RPMDNNIAGVPQAPAVNGKKSSPTNMASAGGAIATPPSVGGAYVVKSGDSLFSIAKKHNVPVDQLKAANGLTSGAIRVGQ
SLVIPSAAAGAPTQVAAITPQPANPAKAASAPANGGAEVKPYTPPQASNKVIEDAEKDQAAAPSSTGISQMRWPVRGRIL
ASFGQREGTSVSDGIDIMVPEGTPVKAAENGVVIYAGDGLKEFGQTVLIRHDNGLVTVYGHNSQIMVQRGQKVRRGEEIA
KSGMSGNAKSPKLHFEVRKNSAPVNPTKYLES
>Mature_432_residues
MDELNMRLPILQHTSERLLRNVAIVLIAGFGAGCSADTMRFTDGIFTGSTSSQPVAQQPAGNVYASAPVASAPPVSSGTV
QRNSLPPVSSAPLGAPVAAASTQMRNQVDQAQDMAASRVNNTVNAAETRVASAATVTHNTVNGAKEKVLGQLPATGQGAP
RPMDNNIAGVPQAPAVNGKKSSPTNMASAGGAIATPPSVGGAYVVKSGDSLFSIAKKHNVPVDQLKAANGLTSGAIRVGQ
SLVIPSAAAGAPTQVAAITPQPANPAKAASAPANGGAEVKPYTPPQASNKVIEDAEKDQAAAPSSTGISQMRWPVRGRIL
ASFGQREGTSVSDGIDIMVPEGTPVKAAENGVVIYAGDGLKEFGQTVLIRHDNGLVTVYGHNSQIMVQRGQKVRRGEEIA
KSGMSGNAKSPKLHFEVRKNSAPVNPTKYLES

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=241, Percent_Identity=29.8755186721992, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1789099, Length=263, Percent_Identity=28.5171102661597, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=41.1764705882353, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081989, Length=142, Percent_Identity=35.9154929577465, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 44207; Mature: 44207

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELNMRLPILQHTSERLLRNVAIVLIAGFGAGCSADTMRFTDGIFTGSTSSQPVAQQPA
CCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCCEECCCCEEECCCCCCCCCCCCC
GNVYASAPVASAPPVSSGTVQRNSLPPVSSAPLGAPVAAASTQMRNQVDQAQDMAASRVN
CCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
NTVNAAETRVASAATVTHNTVNGAKEKVLGQLPATGQGAPRPMDNNIAGVPQAPAVNGKK
CCHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSPTNMASAGGAIATPPSVGGAYVVKSGDSLFSIAKKHNVPVDQLKAANGLTSGAIRVGQ
CCCCCHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHCC
SLVIPSAAAGAPTQVAAITPQPANPAKAASAPANGGAEVKPYTPPQASNKVIEDAEKDQA
EEECCCCCCCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
AAPSSTGISQMRWPVRGRILASFGQREGTSVSDGIDIMVPEGTPVKAAENGVVIYAGDGL
CCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCH
KEFGQTVLIRHDNGLVTVYGHNSQIMVQRGQKVRRGEEIAKSGMSGNAKSPKLHFEVRKN
HHCCCEEEEEECCCEEEEEECCCEEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEEEECC
SAPVNPTKYLES
CCCCCHHHHCCC
>Mature Secondary Structure
MDELNMRLPILQHTSERLLRNVAIVLIAGFGAGCSADTMRFTDGIFTGSTSSQPVAQQPA
CCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCCEECCCCEEECCCCCCCCCCCCC
GNVYASAPVASAPPVSSGTVQRNSLPPVSSAPLGAPVAAASTQMRNQVDQAQDMAASRVN
CCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
NTVNAAETRVASAATVTHNTVNGAKEKVLGQLPATGQGAPRPMDNNIAGVPQAPAVNGKK
CCHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSPTNMASAGGAIATPPSVGGAYVVKSGDSLFSIAKKHNVPVDQLKAANGLTSGAIRVGQ
CCCCCHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHCC
SLVIPSAAAGAPTQVAAITPQPANPAKAASAPANGGAEVKPYTPPQASNKVIEDAEKDQA
EEECCCCCCCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
AAPSSTGISQMRWPVRGRILASFGQREGTSVSDGIDIMVPEGTPVKAAENGVVIYAGDGL
CCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCH
KEFGQTVLIRHDNGLVTVYGHNSQIMVQRGQKVRRGEEIAKSGMSGNAKSPKLHFEVRKN
HHCCCEEEEEECCCEEEEEECCCEEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEEEECC
SAPVNPTKYLES
CCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]