Click here to switch to the map view.

The map label for this gene is scpB [H]

Identifier: 225852393

GI number: 225852393

Start: 876515

End: 877240

Strand: Direct

Name: scpB [H]

Synonym: BMEA_A0919

Alternate gene names: 225852393

Gene position: 876515-877240 (Clockwise)

Preceding gene: 225852392

Following gene: 225852394

Centisome position: 41.23

GC content: 60.74

Gene sequence:

>726_bases
ATGCCTGAAGCAGAGCGCCGCGATTTGATGGATATGGAAGGCGTTGGGGAAGAAGAGCAGGCGGGGCCTGCCTCGCCGGT
GACGCTTGCCGAGCTTGCCCGCATTGTGGAGGCGATTGTTTTTGCGTCTTCGCAGCCTGTTTGCGAGCGCGCACTTGCCG
AGCGGCTTCCCGCCAATGTGGATATTGCTCCGGTTTTGAACCATCTCCAGAAGGTTTACGAGGGCAGGGGCGTGCATTTT
GTGAAGGTGGGCAGTGGCTGGGCGTTTCGCACCGCGCCAGATCTCGCCTTCATCATGAACCGCGAGACTGTTCAGCAGCG
CAAGCTTTCGCGCGCGGCCATGGAGGTGCTTGCCATCATTGCCTATCACCAGCCGGTGACACGCGCCGAACTTGAGGATA
TTCGCGGCGTGGAAACATCCAAGGGGACGCTTGATGTCTTGATGGAAACCGGCTGGATCAAGCTGCGCGGGCGCAGGCGC
ACGCCAGGGCGCCCGGTAACATATGGCACCACCGACGCTTTCCTCGACCATTTTGGCCTGCCGGAAATCCGCGATCTGCC
CGGTCTTGAGGAATTGCGCGGCGCAGGGCTTCTCTCGGCGCGCATTCCTTCCAGTTTTGCCGTACCGATCCCCAATATCG
ACCCGGACGAGCTGACCGAAGGGGAGGACCCGCTGGAGGATATTGATCTGGAGGGGCTGGGTTTGCTTGCACCCAGGGGA
GAATAG

Upstream 100 bases:

>100_bases
CTGGTGCGCGAAGGCAAGCTTGAAGTACGCCAGAACGCTCCGTTCGAGCCGATCTATATGCGCGCGACCCGCGAACTCGA
TGAATTCGATGAGGACGAAA

Downstream 100 bases:

>100_bases
AACAAAATTTCTGCCTGCGACGAATTAATCCGGTTTGAAGCCGTTCATCATCACACTTCTGTTTGAAAGATTTGTTGAAA
GCGCTTAAATCGTATCGGAG

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MPEAERRDLMDMEGVGEEEQAGPASPVTLAELARIVEAIVFASSQPVCERALAERLPANVDIAPVLNHLQKVYEGRGVHF
VKVGSGWAFRTAPDLAFIMNRETVQQRKLSRAAMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLMETGWIKLRGRRR
TPGRPVTYGTTDAFLDHFGLPEIRDLPGLEELRGAGLLSARIPSSFAVPIPNIDPDELTEGEDPLEDIDLEGLGLLAPRG
E

Sequences:

>Translated_241_residues
MPEAERRDLMDMEGVGEEEQAGPASPVTLAELARIVEAIVFASSQPVCERALAERLPANVDIAPVLNHLQKVYEGRGVHF
VKVGSGWAFRTAPDLAFIMNRETVQQRKLSRAAMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLMETGWIKLRGRRR
TPGRPVTYGTTDAFLDHFGLPEIRDLPGLEELRGAGLLSARIPSSFAVPIPNIDPDELTEGEDPLEDIDLEGLGLLAPRG
E
>Mature_240_residues
PEAERRDLMDMEGVGEEEQAGPASPVTLAELARIVEAIVFASSQPVCERALAERLPANVDIAPVLNHLQKVYEGRGVHFV
KVGSGWAFRTAPDLAFIMNRETVQQRKLSRAAMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLMETGWIKLRGRRRT
PGRPVTYGTTDAFLDHFGLPEIRDLPGLEELRGAGLLSARIPSSFAVPIPNIDPDELTEGEDPLEDIDLEGLGLLAPRGE

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 26423; Mature: 26292

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEAERRDLMDMEGVGEEEQAGPASPVTLAELARIVEAIVFASSQPVCERALAERLPANV
CCCCHHHHCHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
DIAPVLNHLQKVYEGRGVHFVKVGSGWAFRTAPDLAFIMNRETVQQRKLSRAAMEVLAII
CHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AYHQPVTRAELEDIRGVETSKGTLDVLMETGWIKLRGRRRTPGRPVTYGTTDAFLDHFGL
HHCCCCHHHHHHHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCEECCCHHHHHHHCCC
PEIRDLPGLEELRGAGLLSARIPSSFAVPIPNIDPDELTEGEDPLEDIDLEGLGLLAPRG
CHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCHHHCCCCCCEECCCCC
E
C
>Mature Secondary Structure 
PEAERRDLMDMEGVGEEEQAGPASPVTLAELARIVEAIVFASSQPVCERALAERLPANV
CCCHHHHCHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
DIAPVLNHLQKVYEGRGVHFVKVGSGWAFRTAPDLAFIMNRETVQQRKLSRAAMEVLAII
CHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AYHQPVTRAELEDIRGVETSKGTLDVLMETGWIKLRGRRRTPGRPVTYGTTDAFLDHFGL
HHCCCCHHHHHHHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCEECCCHHHHHHHCCC
PEIRDLPGLEELRGAGLLSARIPSSFAVPIPNIDPDELTEGEDPLEDIDLEGLGLLAPRG
CHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCHHHCCCCCCEECCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA