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The map label for this gene is ihfA

Identifier: 225852293

GI number: 225852293

Start: 783138

End: 783461

Strand: Direct

Name: ihfA

Synonym: BMEA_A0816

Alternate gene names: 225852293

Gene position: 783138-783461 (Clockwise)

Preceding gene: 225852292

Following gene: 225852294

Centisome position: 36.84

GC content: 52.78

Gene sequence:

>324_bases
ATGGGAGGTAAAACGGTCACGCGGGCTGATCTGGCAGAGGCTGTTTACCGTAAGGTAGGCCTTTCCAGAACGGAATCGGC
GGCTTTGGTCGAGATGATACTCGATGAAGTCTGTGACGCTATCGTCAATGGCGAAACGGTGAAATTGTCGTCTTTTGCGA
CATTTCAGGTTCGCGACAAGAACGAGCGTATCGGTCGTAACCCCAAGACGGGTGAGGAAGTGCCGATCCTCCCGCGGCGT
GTGATGACGTTCAAGGCGTCTAATGTTCTCAAGCAGCGCATTTTGCAGGAACATCAGAAGCGTCAGGGTAAAACCTCGAA
GTGA

Upstream 100 bases:

>100_bases
CGTAAGGGAACTCGTGGCTTGACCATTATGCTTTTATTTGTGTAACGTCCTGTCATGTAAGGATATTATCTGTTCAAACG
CTAACCAGGCAGGTTCGGTC

Downstream 100 bases:

>100_bases
AGTTTCAATGCCGCCTTTCCGGGCGGCATTTTCGCAAGATATTTTTTCAATATGAAGCTTTCGGGTGCCGCTCTTCAGCG
GCACCTTTTTGTTTGCTTGC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MGGKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGRNPKTGEEVPILPRR
VMTFKASNVLKQRILQEHQKRQGKTSK

Sequences:

>Translated_107_residues
MGGKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGRNPKTGEEVPILPRR
VMTFKASNVLKQRILQEHQKRQGKTSK
>Mature_106_residues
GGKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGRNPKTGEEVPILPRRV
MTFKASNVLKQRILQEHQKRQGKTSK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=90, Percent_Identity=48.8888888888889, Blast_Score=100, Evalue=3e-23,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=32.5842696629214, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_BRUA1 (B2S525)

Other databases:

- EMBL:   CP000887
- RefSeq:   YP_001934746.1
- ProteinModelPortal:   B2S525
- SMR:   B2S525
- GeneID:   6327907
- GenomeReviews:   CP000887_GR
- KEGG:   bmc:BAbS19_I07480
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- ProtClustDB:   PRK00285
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11972; Mature: 11841

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDK
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCC
NERIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGKTSK
CHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GGKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDK
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCC
NERIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGKTSK
CHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA