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The map label for this gene is ycbB [H]

Identifier: 225852279

GI number: 225852279

Start: 769735

End: 771036

Strand: Direct

Name: ycbB [H]

Synonym: BMEA_A0802

Alternate gene names: 225852279

Gene position: 769735-771036 (Clockwise)

Preceding gene: 225852277

Following gene: 225852280

Centisome position: 36.21

GC content: 58.06

Gene sequence:

>1302_bases
ATGACCAAGACCGACAGACCAGCCAATGCTTTCAGGGCCGACCGCCGCCGCTTTCTGCGCAGTGCGGCAACAGCCGGGCT
TTCCGTGGCTGTCTCCGCCATGGTTTCTTCGGCCTATGCTCAACAGGTTCTGAGCGACGTCATTTCCTCGCCGCGTCGTG
GCAATTGGGACGACCAGTTTGATGCCCGTGCGACGGGCGGGCGGCGCGTTGCCACGAACCAGCCGGTCCTGAGCCCGCAG
ACGGTCGCCGATATCCAGAATGCAATTGTGCAATATACCGATATTGCAAGTCGCGGCGGCTGGCCCTTGGTGCCGGGCAA
TGCAAGGCTCCAGATTGGCGTTAACGACCCGGCGGTGCAATATCTGCGCAAGCGTCTGATGATTTCCGGCGATCTGCCGC
AGGAAGCCGGTCTTTCCACAGCTTTCGACACCTATGTCGATGCGGCGCTCAAGCGTTTTCAGGCTCGTCACGGCCTGCCG
GCGGATGGTGTCATGGGACAGTTCACCTATGCGGCCATGAATGTGGACGTGAATACGCGTCTCGGCCAGCTTCAAACCAA
TTTGCAGCGCCTTGCGCCTTTGGCCAACGATACCATGCAGGAGCAGCGCTTCGTCATGGTCAACATTCCCGCAGCCCGCA
TCGAGGCTGTTGAAGGTGGCAGCGTCATTCAGCGTCACACGGCCGTTGTGGGCAAGATCGACCGCCAGACGCCGCTCCTC
AATTCCAAGATTCACGAAGTCATTCTCAATCCTTACTGGACCGCGCCAAAGTCGATCATCCAGAAGGACATCATTCCGCT
GATGCGCAAGGATCCGGAATATCTGACGAAGAACAAGATCCGTCTTTACGACCAGTCGGGTCAGGAAGTTCCGCCGGAAA
GCGTGGACTGGAACACCGACGATGCGGTGAAGCTGATGTTCCGTCAGGACCCGGGCAAGATCAACGCCATGTCCTCGACC
AAGATCAACTTCCACAATCCTTATGCGGTCTATATGCACGATACGCCGCAGAAGAGCTATTTCAACAAGCTCATGCGTTT
CGACTCATCGGGCTGTGTGCGCGTGCAGAATGTGCGCGATCTCGACGTCTGGCTGCTCAAGAATACGCCGGGCTGGGACC
GCCAGAACATTGAAGCCACGATCAAGTCGGGCGTCAATACGCCGATCCAGCTTGCCGATCCGGTTCCGCTGCACTTCGTC
TATATCAGTGCCTGGTCCACGGGTGACGGTGTGGTGCAGTTCCGCGATGATATCTACAAGATGGATGGCTCAACCGAACT
GGCGCTTGGCACGGACACCTGA

Upstream 100 bases:

>100_bases
GTTCGCAGATTTGCGGTCCGGGATCGCCTTTATGACCTGTTCCTGATATTCTCTGGGAAGATTGCCGCAAGAGCGGTTAG
CCTTTTGGGACGTTAATCAA

Downstream 100 bases:

>100_bases
TTGCGTCAAAAACCACCTGTTGCAAGCCGCCCGGATGCCATGCCGGGCGGCTTTTTGCTTGTGCGGCATTTATCAAATCG
GTTTGCCGCATTTTGGAACA

Product: peptidoglycan-binding domain 1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MTKTDRPANAFRADRRRFLRSAATAGLSVAVSAMVSSAYAQQVLSDVISSPRRGNWDDQFDARATGGRRVATNQPVLSPQ
TVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAALKRFQARHGLP
ADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLL
NSKIHEVILNPYWTAPKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSST
KINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPIQLADPVPLHFV
YISAWSTGDGVVQFRDDIYKMDGSTELALGTDT

Sequences:

>Translated_433_residues
MTKTDRPANAFRADRRRFLRSAATAGLSVAVSAMVSSAYAQQVLSDVISSPRRGNWDDQFDARATGGRRVATNQPVLSPQ
TVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAALKRFQARHGLP
ADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLL
NSKIHEVILNPYWTAPKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSST
KINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPIQLADPVPLHFV
YISAWSTGDGVVQFRDDIYKMDGSTELALGTDT
>Mature_432_residues
TKTDRPANAFRADRRRFLRSAATAGLSVAVSAMVSSAYAQQVLSDVISSPRRGNWDDQFDARATGGRRVATNQPVLSPQT
VADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAALKRFQARHGLPA
DGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLN
SKIHEVILNPYWTAPKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTK
INFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPIQLADPVPLHFVY
ISAWSTGDGVVQFRDDIYKMDGSTELALGTDT

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=286, Percent_Identity=36.3636363636364, Blast_Score=181, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 48207; Mature: 48076

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTDRPANAFRADRRRFLRSAATAGLSVAVSAMVSSAYAQQVLSDVISSPRRGNWDDQF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DARATGGRRVATNQPVLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQ
CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEECCCCHHHH
YLRKRLMISGDLPQEAGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTR
HHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEHHHH
LGQLQTNLQRLAPLANDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLL
HHHHHHHHHHHHHHHCCHHHHCCEEEEECCHHHEEECCCCHHHHHHHHHHHCCCCCCCCH
NSKIHEVILNPYWTAPKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTD
HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCC
DAVKLMFRQDPGKINAMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRD
HHEEEEEECCCCCEEEECCCEEEECCCEEEEEECCCCHHHHHHHHHCCCCCCEEECCCCC
LDVWLLKNTPGWDRQNIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYK
EEEEEEECCCCCCCHHHHHHHHCCCCCCEEECCCCCEEEEEEEEECCCCCEEEECHHHHC
MDGSTELALGTDT
CCCCCEEEEECCC
>Mature Secondary Structure 
TKTDRPANAFRADRRRFLRSAATAGLSVAVSAMVSSAYAQQVLSDVISSPRRGNWDDQF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DARATGGRRVATNQPVLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQ
CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEECCCCHHHH
YLRKRLMISGDLPQEAGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTR
HHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEHHHH
LGQLQTNLQRLAPLANDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLL
HHHHHHHHHHHHHHHCCHHHHCCEEEEECCHHHEEECCCCHHHHHHHHHHHCCCCCCCCH
NSKIHEVILNPYWTAPKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTD
HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCC
DAVKLMFRQDPGKINAMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRD
HHEEEEEECCCCCEEEECCCEEEECCCEEEEEECCCCHHHHHHHHHCCCCCCEEECCCCC
LDVWLLKNTPGWDRQNIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYK
EEEEEEECCCCCCCHHHHHHHHCCCCCCEEECCCCCEEEEEEEEECCCCCEEEECHHHHC
MDGSTELALGTDT
CCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]