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The map label for this gene is rarD [H]

Identifier: 225852200

GI number: 225852200

Start: 685515

End: 686435

Strand: Direct

Name: rarD [H]

Synonym: BMEA_A0716

Alternate gene names: 225852200

Gene position: 685515-686435 (Clockwise)

Preceding gene: 225852199

Following gene: 225852201

Centisome position: 32.25

GC content: 57.98

Gene sequence:

>921_bases
ATGGCCGATCAGGCTATATCCGATACACGTCTTTCAGACGGTTCGCGCGGTTTTCTGATGGCGCTCGGAGCTTATGGACT
ATGGGGCGCGTTGCCATTTTATCTCAAGGCGCTGTCTCACGTTCCGGCGATGGAAGTCGTCTCGCATCGCGTCATCTGGT
CCGTGCCGGTCGCGCTTGTGCTGTTGATCTTGCTTGGTCAGTTCAGGGGCATCCTGAGTGCAGTTCGCCAGCCGCGAATG
CTGGCCATGGCTGCATTGACGGCGGCGCTCGTCACTATGAACTGGTCTGTTTATGTCTGGGCGGTTGCACATGACCAGGT
GATGGGGGCCGCGCTCGGCTATTATATCAATCCCTTGTTCAACGTGGTTCTGGGCCGTTTGTTTCTGGGCGAGCGGCTGA
CAAAAACACAATATGTCGCCGTGGGTCTCGCCTTTGTGGCGGTCGTGCTTCTCACTATCAATGCGGGCGGCTTGCCCTGG
GTTTCGCTGGCCCTGCCGATCAGCTTCGGCCTTTATGGCTTCTTCCGCAAGTCGTTGCCGATGCCGCCCTTGCAGGGTTT
TACGCTGGAAGTGCTGATCCTTTGCATCCCCGCGCTTGCCTATGTGGCATGGCTCGCCGCAACGGGGCAGGACCATTTCG
TTGCGGGGCCCGTTTCCAATATTACGCTTCTGTTGCTGGCTGGACCCTTCACCGCCATTCCGCTCATTCTTTATGTGGGC
GGGGCGAAGCTTCTGCGCTATGCGACACTTGGCCTGATGCAGTATATGACGCCGACCATGCTGTTTTTCTTCGCCATATT
CATCTTCCATGAACCGTTCTCGACGGCGCAGCTTGCAGCATTCGTGCTCATATGGGCGGGACTGGCGCTCTACACATGGT
CTTCGCTTTCCCAGCACGGGCGCAACCGCGCGCAGGCCTGA

Upstream 100 bases:

>100_bases
CGGCGCTCTAATCCTTTGTTTTGACGCGCATTTTTTCCGAAAACCGTTTCACACTTTTCGGGATGTGCTCTAATTGATTT
CTCCGGGGGGGGGGGATGGC

Downstream 100 bases:

>100_bases
ATATTTGATGCGAAGATGGTTAATCTCCGGTGGATATCTGCCGGAGTGACATATTTTGGCCGCTCTATCCCCGTTAGGTC
CAAGAAGTCTTATTCTTACA

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MADQAISDTRLSDGSRGFLMALGAYGLWGALPFYLKALSHVPAMEVVSHRVIWSVPVALVLLILLGQFRGILSAVRQPRM
LAMAALTAALVTMNWSVYVWAVAHDQVMGAALGYYINPLFNVVLGRLFLGERLTKTQYVAVGLAFVAVVLLTINAGGLPW
VSLALPISFGLYGFFRKSLPMPPLQGFTLEVLILCIPALAYVAWLAATGQDHFVAGPVSNITLLLLAGPFTAIPLILYVG
GAKLLRYATLGLMQYMTPTMLFFFAIFIFHEPFSTAQLAAFVLIWAGLALYTWSSLSQHGRNRAQA

Sequences:

>Translated_306_residues
MADQAISDTRLSDGSRGFLMALGAYGLWGALPFYLKALSHVPAMEVVSHRVIWSVPVALVLLILLGQFRGILSAVRQPRM
LAMAALTAALVTMNWSVYVWAVAHDQVMGAALGYYINPLFNVVLGRLFLGERLTKTQYVAVGLAFVAVVLLTINAGGLPW
VSLALPISFGLYGFFRKSLPMPPLQGFTLEVLILCIPALAYVAWLAATGQDHFVAGPVSNITLLLLAGPFTAIPLILYVG
GAKLLRYATLGLMQYMTPTMLFFFAIFIFHEPFSTAQLAAFVLIWAGLALYTWSSLSQHGRNRAQA
>Mature_305_residues
ADQAISDTRLSDGSRGFLMALGAYGLWGALPFYLKALSHVPAMEVVSHRVIWSVPVALVLLILLGQFRGILSAVRQPRML
AMAALTAALVTMNWSVYVWAVAHDQVMGAALGYYINPLFNVVLGRLFLGERLTKTQYVAVGLAFVAVVLLTINAGGLPWV
SLALPISFGLYGFFRKSLPMPPLQGFTLEVLILCIPALAYVAWLAATGQDHFVAGPVSNITLLLLAGPFTAIPLILYVGG
AKLLRYATLGLMQYMTPTMLFFFAIFIFHEPFSTAQLAAFVLIWAGLALYTWSSLSQHGRNRAQA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=291, Percent_Identity=35.3951890034364, Blast_Score=191, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33267; Mature: 33136

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADQAISDTRLSDGSRGFLMALGAYGLWGALPFYLKALSHVPAMEVVSHRVIWSVPVALV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LLILLGQFRGILSAVRQPRMLAMAALTAALVTMNWSVYVWAVAHDQVMGAALGYYINPLF
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHH
NVVLGRLFLGERLTKTQYVAVGLAFVAVVLLTINAGGLPWVSLALPISFGLYGFFRKSLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
MPPLQGFTLEVLILCIPALAYVAWLAATGQDHFVAGPVSNITLLLLAGPFTAIPLILYVG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEECCHHHHHHHHHHH
GAKLLRYATLGLMQYMTPTMLFFFAIFIFHEPFSTAQLAAFVLIWAGLALYTWSSLSQHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
RNRAQA
CCCCCC
>Mature Secondary Structure 
ADQAISDTRLSDGSRGFLMALGAYGLWGALPFYLKALSHVPAMEVVSHRVIWSVPVALV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LLILLGQFRGILSAVRQPRMLAMAALTAALVTMNWSVYVWAVAHDQVMGAALGYYINPLF
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHH
NVVLGRLFLGERLTKTQYVAVGLAFVAVVLLTINAGGLPWVSLALPISFGLYGFFRKSLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
MPPLQGFTLEVLILCIPALAYVAWLAATGQDHFVAGPVSNITLLLLAGPFTAIPLILYVG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEECCHHHHHHHHHHH
GAKLLRYATLGLMQYMTPTMLFFFAIFIFHEPFSTAQLAAFVLIWAGLALYTWSSLSQHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
RNRAQA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA