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The map label for this gene is rplU [H]

Identifier: 225852165

GI number: 225852165

Start: 654889

End: 655563

Strand: Direct

Name: rplU [H]

Synonym: BMEA_A0680

Alternate gene names: 225852165

Gene position: 654889-655563 (Clockwise)

Preceding gene: 225852164

Following gene: 225852167

Centisome position: 30.81

GC content: 57.48

Gene sequence:

>675_bases
ATGGAGTATGAGGACGAAATGCCCTTGTTGATTGTTCAATTGGCGATACTAATCGCCGTTGCTTTTGTGGTTGGCTGCTT
TCTGGGGCGCATCCTGCGCCGTCGAAAAAGCGCCGGAAGCGATCATGAGCGAACGATTGTTGCGGCGGCATTATCCACGC
CGCCATTGGCCGAAAAGCCGGAACCTGTCCCGCCAGCAGAACCGGTCAGGGCGGATAGCGATCCTTTGAAAAGGAAAGCC
GGGTTAGAAAAAGCCAGGATTGAGCCTGTGGAAGGCTCTGCTGATTCGGATGTTGCGGCAGCGCCGGTATTGAAGAAAGT
CCCAGCGGAAACACCCGATGACGCCGGCCGCCCGCAATGGCGCGAGGCCCCGCGCCGCGGCAAGGCCGACGAGTTGACGG
CAATTGAGGGGATTGGAAAAGCCATCGAAGCCGTGCTGCATGAGCTTGGCATTTTTCATTACGACCAGATCGCGCAATGG
ACCCGTGAGGAAGCGATATGGATCGAGCGCCGTATCGGCTTTCCGGGGCGCGTGGAGCGTGAGGGCTGGATAGCGCAAGC
GGCAAAGCTTGCCGAACCGCCTGCGAAATCGACAACGAAGCGTGGCGCAAAAACGAAAAAAGCAGCTAATAATGTGAGAT
CAGGAACGCGGCGCGCAAAAAAACAGGCTGGCTGA

Upstream 100 bases:

>100_bases
TGGTGCCGCAACGGGCTGGCTGACGGCTGGAGAGCGATGAGTTTGTTGCCATGGGGGGCGAGCGTTGGCGGCATGGCTGA
TTGCAGTCATTGTTGCGTGT

Downstream 100 bases:

>100_bases
ACCAGTGGGGGCGGCTCCGGTTTATGCTGGAACCGCCCCGGTTTCTTTGGAGAAGCTACTTATCAGCGTCGCCCATAAAC
CAGATCGGTCTTGATATCGG

Product: 50S ribosomal protein L21

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MEYEDEMPLLIVQLAILIAVAFVVGCFLGRILRRRKSAGSDHERTIVAAALSTPPLAEKPEPVPPAEPVRADSDPLKRKA
GLEKARIEPVEGSADSDVAAAPVLKKVPAETPDDAGRPQWREAPRRGKADELTAIEGIGKAIEAVLHELGIFHYDQIAQW
TREEAIWIERRIGFPGRVEREGWIAQAAKLAEPPAKSTTKRGAKTKKAANNVRSGTRRAKKQAG

Sequences:

>Translated_224_residues
MEYEDEMPLLIVQLAILIAVAFVVGCFLGRILRRRKSAGSDHERTIVAAALSTPPLAEKPEPVPPAEPVRADSDPLKRKA
GLEKARIEPVEGSADSDVAAAPVLKKVPAETPDDAGRPQWREAPRRGKADELTAIEGIGKAIEAVLHELGIFHYDQIAQW
TREEAIWIERRIGFPGRVEREGWIAQAAKLAEPPAKSTTKRGAKTKKAANNVRSGTRRAKKQAG
>Mature_224_residues
MEYEDEMPLLIVQLAILIAVAFVVGCFLGRILRRRKSAGSDHERTIVAAALSTPPLAEKPEPVPPAEPVRADSDPLKRKA
GLEKARIEPVEGSADSDVAAAPVLKKVPAETPDDAGRPQWREAPRRGKADELTAIEGIGKAIEAVLHELGIFHYDQIAQW
TREEAIWIERRIGFPGRVEREGWIAQAAKLAEPPAKSTTKRGAKTKKAANNVRSGTRRAKKQAG

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: NA

Molecular weight: Translated: 24440; Mature: 24440

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYEDEMPLLIVQLAILIAVAFVVGCFLGRILRRRKSAGSDHERTIVAAALSTPPLAEKP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
EPVPPAEPVRADSDPLKRKAGLEKARIEPVEGSADSDVAAAPVLKKVPAETPDDAGRPQW
CCCCCCCCCCCCCHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHH
REAPRRGKADELTAIEGIGKAIEAVLHELGIFHYDQIAQWTREEAIWIERRIGFPGRVER
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
EGWIAQAAKLAEPPAKSTTKRGAKTKKAANNVRSGTRRAKKQAG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEYEDEMPLLIVQLAILIAVAFVVGCFLGRILRRRKSAGSDHERTIVAAALSTPPLAEKP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
EPVPPAEPVRADSDPLKRKAGLEKARIEPVEGSADSDVAAAPVLKKVPAETPDDAGRPQW
CCCCCCCCCCCCCHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHH
REAPRRGKADELTAIEGIGKAIEAVLHELGIFHYDQIAQWTREEAIWIERRIGFPGRVER
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
EGWIAQAAKLAEPPAKSTTKRGAKTKKAANNVRSGTRRAKKQAG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA