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The map label for this gene is psd

Identifier: 225851979

GI number: 225851979

Start: 464121

End: 464819

Strand: Direct

Name: psd

Synonym: BMEA_A0476

Alternate gene names: 225851979

Gene position: 464121-464819 (Clockwise)

Preceding gene: 225851978

Following gene: 225851980

Centisome position: 21.83

GC content: 59.66

Gene sequence:

>699_bases
ATGAGCCTGACTGATACTATCCGCAACACTTTCGTGCCGATCCACCGCGAAGGCTACCCGTTCATAGCGGGCTTTTTTGT
GGTGTCGCTCATTCTGGGCTGGCTGTGGGATCCGTTGTTCTGGATCGGCATGGTACTCACCGTCTGGTGCATCTATTTCT
ACCGTGACCCGGAGCGGGTGACGCCCATGGACGATGATCTGGTCATCAGCCCGGCAGATGGCAAGGTCTCCTTTGTCGGG
CTTGCCGTTCCGCCCGCTGAACTCGACCTTGGCTATGAGCCGATGACCCGTGTTTCGGTTTTCATGAATGTGTTTTCGGT
CCATATCAATCGCTCGCCGGTGCGCGGCAAGATCGACAAGGTCGTGCATCGTCCGGGCAAGTTCCTCAATGCCGAACTGG
ACAAGGCCAGCACCGAGAATGAGCGCAACAGCGTGCTGATCGAAAGCCCGCATGGCAAGATCGGCGTGGTGCAGATTGCC
GGGCTGGTGGCGCGGCGCATCGTCTGCTGGTCGAACCAGGATGACGAACTTTCCGTGGGCGAGCGGTTCGGCCTTATCCG
TTTCGGTTCGCGCGTCGATGTCTATCTGCCCTCCGACGCCACGGTGCGCGTCGCGGTCGGCCAGACCGCGATTGCGGGTG
AAACCGTTCTGGCTGATTATGGTACCGAGCGGGGCGAACCCGTGGTACGGATCGCATAA

Upstream 100 bases:

>100_bases
CCGGGCCGCCCACTGCCCCCGACAGCCGTGCATAAATTGCGAAATGCGTTTTGATTTTGGGAGGGATGCGGTAAATACGG
CCAAACGCGAGGAACAAGCG

Downstream 100 bases:

>100_bases
GCCGATGGAAACGCCTTTTCCTCCTTTTGAGCCGAATGGCCGCGTGGATGCATCGCGCGGCCCCAAGCTTTCGCAGATTC
CGTTGCGGATCGTCGTTCCG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSLTDTIRNTFVPIHREGYPFIAGFFVVSLILGWLWDPLFWIGMVLTVWCIYFYRDPERVTPMDDDLVISPADGKVSFVG
LAVPPAELDLGYEPMTRVSVFMNVFSVHINRSPVRGKIDKVVHRPGKFLNAELDKASTENERNSVLIESPHGKIGVVQIA
GLVARRIVCWSNQDDELSVGERFGLIRFGSRVDVYLPSDATVRVAVGQTAIAGETVLADYGTERGEPVVRIA

Sequences:

>Translated_232_residues
MSLTDTIRNTFVPIHREGYPFIAGFFVVSLILGWLWDPLFWIGMVLTVWCIYFYRDPERVTPMDDDLVISPADGKVSFVG
LAVPPAELDLGYEPMTRVSVFMNVFSVHINRSPVRGKIDKVVHRPGKFLNAELDKASTENERNSVLIESPHGKIGVVQIA
GLVARRIVCWSNQDDELSVGERFGLIRFGSRVDVYLPSDATVRVAVGQTAIAGETVLADYGTERGEPVVRIA
>Mature_231_residues
SLTDTIRNTFVPIHREGYPFIAGFFVVSLILGWLWDPLFWIGMVLTVWCIYFYRDPERVTPMDDDLVISPADGKVSFVGL
AVPPAELDLGYEPMTRVSVFMNVFSVHINRSPVRGKIDKVVHRPGKFLNAELDKASTENERNSVLIESPHGKIGVVQIAG
LVARRIVCWSNQDDELSVGERFGLIRFGSRVDVYLPSDATVRVAVGQTAIAGETVLADYGTERGEPVVRIA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_BRUA1 (B2S9U3)

Other databases:

- EMBL:   CP000887
- RefSeq:   YP_001934447.1
- GeneID:   6328375
- GenomeReviews:   CP000887_GR
- KEGG:   bmc:BAbS19_I04340
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 25808; Mature: 25677

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTDTIRNTFVPIHREGYPFIAGFFVVSLILGWLWDPLFWIGMVLTVWCIYFYRDPERV
CCHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TPMDDDLVISPADGKVSFVGLAVPPAELDLGYEPMTRVSVFMNVFSVHINRSPVRGKIDK
CCCCCCEEEECCCCCEEEEEEECCCHHCCCCCCCHHHHHHHHHHHHHEECCCCCCHHHHH
VVHRPGKFLNAELDKASTENERNSVLIESPHGKIGVVQIAGLVARRIVCWSNQDDELSVG
HHHCCCCHHCCCCCCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHEEECCCCCCCCHH
ERFGLIRFGSRVDVYLPSDATVRVAVGQTAIAGETVLADYGTERGEPVVRIA
HHCCEEEECCEEEEEECCCCEEEEEECCEECCCCEEEECCCCCCCCEEEEEC
>Mature Secondary Structure 
SLTDTIRNTFVPIHREGYPFIAGFFVVSLILGWLWDPLFWIGMVLTVWCIYFYRDPERV
CHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TPMDDDLVISPADGKVSFVGLAVPPAELDLGYEPMTRVSVFMNVFSVHINRSPVRGKIDK
CCCCCCEEEECCCCCEEEEEEECCCHHCCCCCCCHHHHHHHHHHHHHEECCCCCCHHHHH
VVHRPGKFLNAELDKASTENERNSVLIESPHGKIGVVQIAGLVARRIVCWSNQDDELSVG
HHHCCCCHHCCCCCCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHEEECCCCCCCCHH
ERFGLIRFGSRVDVYLPSDATVRVAVGQTAIAGETVLADYGTERGEPVVRIA
HHCCEEEECCEEEEEECCCCEEEEEECCEECCCCEEEECCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA