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The map label for this gene is cspA [C]

Identifier: 225851957

GI number: 225851957

Start: 446290

End: 446499

Strand: Direct

Name: cspA [C]

Synonym: BMEA_A0454

Alternate gene names: 225851957

Gene position: 446290-446499 (Clockwise)

Preceding gene: 225851956

Following gene: 225851959

Centisome position: 20.99

GC content: 53.33

Gene sequence:

>210_bases
ATGGCAAACGGAACAGTAAAATTCTTTAACTCCACCAAGGGCTTTGGCTTCATCCAGCCGGATGACGGCAGCTCGGATGT
ATTCGTCCATATTTCTGCTGTGGAACGCGCTGGTCTTCATTCCCTCGTGGAAGGCCAGAAGGTCGGCTACGAAGTCGTTG
CTGATCGCCGTTCGGGCAAAAGCGCCGCGGCTAATCTGGAATCGCTGTAA

Upstream 100 bases:

>100_bases
GCGCGGATAACGCCCCCCGGTATTTCTTTCAAACTCGTAAAAATCGGCGGCGAACGGAAGTTCGCTATACTTTAACCGTG
CGAATTGAAAGGAATTCAAT

Downstream 100 bases:

>100_bases
TCAGCGTTGAATGAATTTGTCTCCAGTCTTTGACCACGGATGTACTGGCACTGATTGTTGAGACAATGGGAAGGTCGGTG
TAAAGACCGGCCTTTTTTTA

Product: ATP/GTP-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MANGTVKFFNSTKGFGFIQPDDGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRRSGKSAAANLESL

Sequences:

>Translated_69_residues
MANGTVKFFNSTKGFGFIQPDDGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRRSGKSAAANLESL
>Mature_68_residues
ANGTVKFFNSTKGFGFIQPDDGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRRSGKSAAANLESL

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=54.5454545454545, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1786841, Length=60, Percent_Identity=55, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=51.5151515151515, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=50, Blast_Score=66, Evalue=4e-13,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=50.7936507936508, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7301; Mature: 7170

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANGTVKFFNSTKGFGFIQPDDGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRRSGK
CCCCEEEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCHHHHCCCCCCEEEEECCCCCC
SAAANLESL
CCCCCCCCC
>Mature Secondary Structure 
ANGTVKFFNSTKGFGFIQPDDGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRRSGK
CCCEEEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCHHHHCCCCCCEEEEECCCCCC
SAAANLESL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]