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The map label for this gene is dinF [H]

Identifier: 225851856

GI number: 225851856

Start: 342607

End: 343974

Strand: Direct

Name: dinF [H]

Synonym: BMEA_A0347

Alternate gene names: 225851856

Gene position: 342607-343974 (Clockwise)

Preceding gene: 225851855

Following gene: 225851859

Centisome position: 16.12

GC content: 60.09

Gene sequence:

>1368_bases
ATGGATCAGGTGATGCAGGGCGGCGGGCAGAGCATCGGTAACGTAACAAAGCCGTTCGATGTCACGCATCGCATGGTGAT
GCTGATCGCCGTGCCTATGACGCTTGCCGCTATCACCACGCCCCTGTTGGGGCTGGTCGATATGGGGGTGGTCGGCCAGA
TGGGGCAGGCCGAATTGATCGGCGGGCTTGCCATCGGTGCGCTTGTCTTCGATTTCCTGCTTTCCTTGTTCAATTTTCTG
CGCTCCGGCACCACCGGCCTTGTGGCGCAGGCCATGGGCGCGGGTGACGCCGTGGAAGAACAGGCAATTTTCTGGCGCGC
CATCATCATCGCCGTCGCGGCGGGCGGGCTCATGATCCTGTGCCTGCCGCTTATTCTGGGCGCGGCCTCCACCTTCATGC
ATCCGACACCGGCAACGCGGGCCGCAATGGCGACCTATATATCGATCCGCATGTTGTCGGCCCCCGTCGCACTCATCAAC
TATTCCATACTGGGCCTCGTTCTGGGGCGGGGGCAGGGCATTCTGGGCCTCGGCCTTCAGGTGCTTTTGAACGGCATCAA
CATTGCACTCTGCATCGTTCTGGGACTGGAACTTGGCTGGGGTGTTACGGGTGTGGCCTGGGCCACGGTCACGGGCGAAA
CCGTGGCGGCGCTGGTCGGCCTCTTTATCGTCATGCGCCATTTCCGCAAGGATGCAACATTGCGTCCTGACCGCAAGCGC
ATTTTCCAGCGCGAGGGTATAATGCGCATGTTCGCGGTCAATCGCGATATCATGATCCGCTCCCTCCTGCTGCTCACGGC
ATTTGCCTTTTTCACCCGCGCCGGTTCTGATCTGGGCCCCGTGACGCTGGCCGCCAATGCGGTGCTGTTGAATTTCTTCC
TCGTGGCGGGCTTTTTCCTCGACGGTATGGCGGCTGCGGCTGAACAGATCATCGGGCGCTCCATCGGTGCGCGCTACAGC
CCCGCCTTCCGGCGCGGTGCAAAGCTTACCTTCATCTGGGGGCTGGTGATGGCAGGTCTCGTCGCCTTCTTCCTGCTGGT
CTTTGGCGATACGATTATTTCGCTTCTTTCCAGGGCCGAGGATGTGCATGTTGAAGCCATGAAATATCTGCCCTGGGCGG
CGCTGACAGGGCTTACCGGCCTGCTCGCCTTCCACATGGATGGCGTCTATATCGGCGCAACCTGGTCGCGCGATATGCGC
AATATGATGTTCCTGTCGCTCATCTTCTTTCTGGCTGTGCTTTATGCGGCAAAGCCCGTGATGGGTAATCACGGGCTTTG
GCTTGCGATCAATCTGTTTTTGTCGGTGCGGGGCATTACGCTTCTGGCGATCCTGCCGCGCCGCTATCGCATGGAATTCG
CGCACTGA

Upstream 100 bases:

>100_bases
GTTTCTGGAGTAGATCGGGGTAGTTGGCGAGGTTCCGGTGCGGAATCGTGGAGGAGAAACATTTCCATCTTTGGAAAAGT
TCGCAGCATTCGGGGGAATG

Downstream 100 bases:

>100_bases
TTTAAGATATAAGTTTGCGTGCGGCCCATTCCTTTGTGTCACGGTCGCGCAATTCAGCAATGCTGGAAACGCCTTCATAC
TTGATTGCCGTGGAAAGGCC

Product: MATE efflux family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MDQVMQGGGQSIGNVTKPFDVTHRMVMLIAVPMTLAAITTPLLGLVDMGVVGQMGQAELIGGLAIGALVFDFLLSLFNFL
RSGTTGLVAQAMGAGDAVEEQAIFWRAIIIAVAAGGLMILCLPLILGAASTFMHPTPATRAAMATYISIRMLSAPVALIN
YSILGLVLGRGQGILGLGLQVLLNGINIALCIVLGLELGWGVTGVAWATVTGETVAALVGLFIVMRHFRKDATLRPDRKR
IFQREGIMRMFAVNRDIMIRSLLLLTAFAFFTRAGSDLGPVTLAANAVLLNFFLVAGFFLDGMAAAAEQIIGRSIGARYS
PAFRRGAKLTFIWGLVMAGLVAFFLLVFGDTIISLLSRAEDVHVEAMKYLPWAALTGLTGLLAFHMDGVYIGATWSRDMR
NMMFLSLIFFLAVLYAAKPVMGNHGLWLAINLFLSVRGITLLAILPRRYRMEFAH

Sequences:

>Translated_455_residues
MDQVMQGGGQSIGNVTKPFDVTHRMVMLIAVPMTLAAITTPLLGLVDMGVVGQMGQAELIGGLAIGALVFDFLLSLFNFL
RSGTTGLVAQAMGAGDAVEEQAIFWRAIIIAVAAGGLMILCLPLILGAASTFMHPTPATRAAMATYISIRMLSAPVALIN
YSILGLVLGRGQGILGLGLQVLLNGINIALCIVLGLELGWGVTGVAWATVTGETVAALVGLFIVMRHFRKDATLRPDRKR
IFQREGIMRMFAVNRDIMIRSLLLLTAFAFFTRAGSDLGPVTLAANAVLLNFFLVAGFFLDGMAAAAEQIIGRSIGARYS
PAFRRGAKLTFIWGLVMAGLVAFFLLVFGDTIISLLSRAEDVHVEAMKYLPWAALTGLTGLLAFHMDGVYIGATWSRDMR
NMMFLSLIFFLAVLYAAKPVMGNHGLWLAINLFLSVRGITLLAILPRRYRMEFAH
>Mature_455_residues
MDQVMQGGGQSIGNVTKPFDVTHRMVMLIAVPMTLAAITTPLLGLVDMGVVGQMGQAELIGGLAIGALVFDFLLSLFNFL
RSGTTGLVAQAMGAGDAVEEQAIFWRAIIIAVAAGGLMILCLPLILGAASTFMHPTPATRAAMATYISIRMLSAPVALIN
YSILGLVLGRGQGILGLGLQVLLNGINIALCIVLGLELGWGVTGVAWATVTGETVAALVGLFIVMRHFRKDATLRPDRKR
IFQREGIMRMFAVNRDIMIRSLLLLTAFAFFTRAGSDLGPVTLAANAVLLNFFLVAGFFLDGMAAAAEQIIGRSIGARYS
PAFRRGAKLTFIWGLVMAGLVAFFLLVFGDTIISLLSRAEDVHVEAMKYLPWAALTGLTGLLAFHMDGVYIGATWSRDMR
NMMFLSLIFFLAVLYAAKPVMGNHGLWLAINLFLSVRGITLLAILPRRYRMEFAH

Specific function: Unknown

COG id: COG0534

COG function: function code V; Na+-driven multidrug efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790477, Length=428, Percent_Identity=35.981308411215, Blast_Score=176, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528 [H]

Pfam domain/function: PF01554 MatE [H]

EC number: NA

Molecular weight: Translated: 48959; Mature: 48959

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]