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The map label for this gene is ycfS [H]

Identifier: 225851674

GI number: 225851674

Start: 152829

End: 153449

Strand: Direct

Name: ycfS [H]

Synonym: BMEA_A0145

Alternate gene names: 225851674

Gene position: 152829-153449 (Clockwise)

Preceding gene: 225851672

Following gene: 225851680

Centisome position: 7.19

GC content: 57.49

Gene sequence:

>621_bases
ATGGATTCTCGCGTTCTCAAGCTGACAGCGGCTCTTTTTCTTGGAGCAGCACTTGCTGGTTGCTCCACAGCCGGTGGTTC
TTTCTACACGGCGTCTTACTCGTCAGTCAGCGATGCTGGTTACGCCATCCCGGCAATCCCGAGCGAAAAGATACCGGCGC
AATATCGCCGTCAGGTTGTAAAATATGCGACGGACGAAAAGCCGGGCACCATCATTGTCGATACGCGTGAGAAATTTCTC
TATCTCATCATGCCTGAGGGCAAGGCGGTGCGCTACGGCATTGGTGTTGGCCGCCGTGGCTTTGAATGGTCTGGCACGGC
CCGTGTGGCGATGAAGCGCGAATGGCCGACCTGGACGCCGCCTTCCGCCATGATCAAGCGCCAGCCGGAATTGGCCAAAT
ATCGCAATGGCATGGATCCGGGCCTGCGCAATCCGCTCGGCGCGCGTGCGCTCTATCTCTACAACAAGGGCGGGGATACG
GGCTATCGCCTGCACGGAACGCCGGAATGGTGGTCCATCGGCAAAGCCATGTCTTCCGGCTGCATCCGTCTGATGAACCA
GGACATTGTCGATCTCTATAACCGTGTCGAACAGGGCGCGAAGGTTGTGGTGAAACAGTAA

Upstream 100 bases:

>100_bases
TGAATGAGCGATTCGCTCCTGTTGATTACCCTTTAGAGCAGCTCCAGTTTTAACAATTTGCCGGACCGCTCTAACGGAAT
CCACTTGATTGGGGGGATAC

Downstream 100 bases:

>100_bases
TCGACGGAATGAAAAAGGCCGCTCTATTTCTTTATTTTACGCATTATCTAATGCTTTGAGCAGCCTCTTTCGTTGAAACC
CGATGCAGGTCAGATCTGTT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MDSRVLKLTAALFLGAALAGCSTAGGSFYTASYSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFL
YLIMPEGKAVRYGIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALYLYNKGGDT
GYRLHGTPEWWSIGKAMSSGCIRLMNQDIVDLYNRVEQGAKVVVKQ

Sequences:

>Translated_206_residues
MDSRVLKLTAALFLGAALAGCSTAGGSFYTASYSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFL
YLIMPEGKAVRYGIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALYLYNKGGDT
GYRLHGTPEWWSIGKAMSSGCIRLMNQDIVDLYNRVEQGAKVVVKQ
>Mature_206_residues
MDSRVLKLTAALFLGAALAGCSTAGGSFYTASYSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFL
YLIMPEGKAVRYGIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALYLYNKGGDT
GYRLHGTPEWWSIGKAMSSGCIRLMNQDIVDLYNRVEQGAKVVVKQ

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=137, Percent_Identity=37.2262773722628, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787968, Length=137, Percent_Identity=38.6861313868613, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1787040, Length=145, Percent_Identity=33.7931034482759, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1788299, Length=140, Percent_Identity=34.2857142857143, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 22733; Mature: 22733

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRVLKLTAALFLGAALAGCSTAGGSFYTASYSSVSDAGYAIPAIPSEKIPAQYRRQVV
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEECCCCCCCCCCHHHHHHHH
KYATDEKPGTIIVDTREKFLYLIMPEGKAVRYGIGVGRRGFEWSGTARVAMKREWPTWTP
HHHCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
PSAMIKRQPELAKYRNGMDPGLRNPLGARALYLYNKGGDTGYRLHGTPEWWSIGKAMSSG
CHHHHHCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHHH
CIRLMNQDIVDLYNRVEQGAKVVVKQ
HHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MDSRVLKLTAALFLGAALAGCSTAGGSFYTASYSSVSDAGYAIPAIPSEKIPAQYRRQVV
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEECCCCCCCCCCHHHHHHHH
KYATDEKPGTIIVDTREKFLYLIMPEGKAVRYGIGVGRRGFEWSGTARVAMKREWPTWTP
HHHCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
PSAMIKRQPELAKYRNGMDPGLRNPLGARALYLYNKGGDTGYRLHGTPEWWSIGKAMSSG
CHHHHHCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHHH
CIRLMNQDIVDLYNRVEQGAKVVVKQ
HHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]