Click here to switch to the map view.

The map label for this gene is soxS [C]

Identifier: 225686932

GI number: 225686932

Start: 1172921

End: 1173724

Strand: Direct

Name: soxS [C]

Synonym: BMEA_B1186

Alternate gene names: 225686932

Gene position: 1172921-1173724 (Clockwise)

Preceding gene: 225686918

Following gene: 225686933

Centisome position: 98.94

GC content: 54.73

Gene sequence:

>804_bases
ATGCTGATGATATTCTTTCAGGGGATGCAGCATTTCGAGATCGACGGCGTCTCTTTCCATCTGGATGTGGGCAGTGGTGA
AGCGCGCAAGCCTTTGGTTTTCATGCTCAACATTGCCCGCTACAGCAAATTGCGCTTTTTCAGCCAAAGCGATGTGCCAT
TGCGCAAGGTGATGATCTCCGCCCCGCATTCCTGGTTGCGCAACCAGCTGGATTTGCAGGATGAAGCACAGGAAACCACG
CTGCGCTCATTCCTCACACAACATCTCGCATCCTATTCTTTCGCCCCCGGACAGCATATTCTGCAACTTGCCGAAAAGAT
CATGAACCCGCCATCCGTGGCGGCAGGCCCGCTGGCGACGCTCAATCTACGCGCGCAGGGGCTCGATATTATGTGGCAGG
CTTGCCTGGCCATGATGGCGGAAAAGGAAAAACAACCGCCGGTCCTGTCATCGGCGAACCGGCAAGATTGCGAGCGCATC
CGCGAATTTATCATGGCCAATCTCGACCGCGACCTGACCATCGACCTGATCGCACAGAAGGCGGCGATCAGCGCATCGAC
GGTTCAGCGCCGCTTCAAGAAACATTACGGCACCACCCTTTATAATTTCATCAAGCAGCAGAGGCTGGAAGCGGCATGTG
TGGCGCTCTCAAGAGACAGTATTCCCATATCCCAGGCGGCACATCTTGCAGGCTATAACAACACATCCACCTTCACGAGT
GCGTTCCGCAAGCTCTATGGATTTTCACCCAAAAAGATGCGTGCGCTAGGAAAAGGCGATCCTTGCCGGAGCGGTTCCGG
TTAA

Upstream 100 bases:

>100_bases
GCCTTATGCAGTACACGTCGCATGAATTTTTTGTTGGTTCGCTCAATAATGCCCCAATTGCACCACCGATTTCAGCGAAC
AGGAAATCTTTCCGAAGCTG

Downstream 100 bases:

>100_bases
AACGGAGCTTTGAAACCAGAGCGCTTCATTCCCGGCGCACGACATCCATCACGATGCAGACCTGTTTTTTCCGCTATTGG
CAGGCCGATTTTTCTTTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcriptional Regulator AraC/XylS Family; Helix-Turn-Helix Domain-Containing Protein; AraC-Family Transcriptional Regulator; Transcriptional Regulator Arac Family; AraC Family Regulatory Helix-Turn-Helix Protein; AraC Family Transcription Regulator; AraC/XylS Family Transcription Factor; Enterobactin-Dependent Positive Regulator; Transcriptional Regulator Protein; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MLMIFFQGMQHFEIDGVSFHLDVGSGEARKPLVFMLNIARYSKLRFFSQSDVPLRKVMISAPHSWLRNQLDLQDEAQETT
LRSFLTQHLASYSFAPGQHILQLAEKIMNPPSVAAGPLATLNLRAQGLDIMWQACLAMMAEKEKQPPVLSSANRQDCERI
REFIMANLDRDLTIDLIAQKAAISASTVQRRFKKHYGTTLYNFIKQQRLEAACVALSRDSIPISQAAHLAGYNNTSTFTS
AFRKLYGFSPKKMRALGKGDPCRSGSG

Sequences:

>Translated_267_residues
MLMIFFQGMQHFEIDGVSFHLDVGSGEARKPLVFMLNIARYSKLRFFSQSDVPLRKVMISAPHSWLRNQLDLQDEAQETT
LRSFLTQHLASYSFAPGQHILQLAEKIMNPPSVAAGPLATLNLRAQGLDIMWQACLAMMAEKEKQPPVLSSANRQDCERI
REFIMANLDRDLTIDLIAQKAAISASTVQRRFKKHYGTTLYNFIKQQRLEAACVALSRDSIPISQAAHLAGYNNTSTFTS
AFRKLYGFSPKKMRALGKGDPCRSGSG
>Mature_267_residues
MLMIFFQGMQHFEIDGVSFHLDVGSGEARKPLVFMLNIARYSKLRFFSQSDVPLRKVMISAPHSWLRNQLDLQDEAQETT
LRSFLTQHLASYSFAPGQHILQLAEKIMNPPSVAAGPLATLNLRAQGLDIMWQACLAMMAEKEKQPPVLSSANRQDCERI
REFIMANLDRDLTIDLIAQKAAISASTVQRRFKKHYGTTLYNFIKQQRLEAACVALSRDSIPISQAAHLAGYNNTSTFTS
AFRKLYGFSPKKMRALGKGDPCRSGSG

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29945; Mature: 29945

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMIFFQGMQHFEIDGVSFHLDVGSGEARKPLVFMLNIARYSKLRFFSQSDVPLRKVMIS
CEEEEECCCCCEEECCEEEEEECCCCCCCCCEEEEHHHHHHHHHHHCCCCCCHHHHHHHH
APHSWLRNQLDLQDEAQETTLRSFLTQHLASYSFAPGQHILQLAEKIMNPPSVAAGPLAT
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEE
LNLRAQGLDIMWQACLAMMAEKEKQPPVLSSANRQDCERIREFIMANLDRDLTIDLIAQK
EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
AAISASTVQRRFKKHYGTTLYNFIKQQRLEAACVALSRDSIPISQAAHLAGYNNTSTFTS
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHH
AFRKLYGFSPKKMRALGKGDPCRSGSG
HHHHHHCCCHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLMIFFQGMQHFEIDGVSFHLDVGSGEARKPLVFMLNIARYSKLRFFSQSDVPLRKVMIS
CEEEEECCCCCEEECCEEEEEECCCCCCCCCEEEEHHHHHHHHHHHCCCCCCHHHHHHHH
APHSWLRNQLDLQDEAQETTLRSFLTQHLASYSFAPGQHILQLAEKIMNPPSVAAGPLAT
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEE
LNLRAQGLDIMWQACLAMMAEKEKQPPVLSSANRQDCERIREFIMANLDRDLTIDLIAQK
EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
AAISASTVQRRFKKHYGTTLYNFIKQQRLEAACVALSRDSIPISQAAHLAGYNNTSTFTS
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHH
AFRKLYGFSPKKMRALGKGDPCRSGSG
HHHHHHCCCHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA