Click here to switch to the map view.

The map label for this gene is ugpB [H]

Identifier: 225686921

GI number: 225686921

Start: 1159703

End: 1160968

Strand: Reverse

Name: ugpB [H]

Synonym: BMEA_B1175

Alternate gene names: 225686921

Gene position: 1160968-1159703 (Counterclockwise)

Preceding gene: 225686922

Following gene: 225686920

Centisome position: 97.93

GC content: 56.48

Gene sequence:

>1266_bases
ATGAAACGTTTTTCCAGTGCACTTGCCGCCCTGGCAATAGTAACAGGTCTCGCCTCGCCTGCCTTTGCCGACACGACGCT
GAACGTGCACTATCCGATGCCTGGCTTCTTCAAGGATGTCATGGCCGATATCTCCAAGAAGTTCATGGAGGAAAATCCGG
ATATCAAGATCAACTTCGTCAGCCCGTCGGCAACCTATGAAGAAGGCATCCAGACGATCATGCGTCAGGCCGGAACGTCG
GAAATGCCGGATATCACATTCACTGGTTTGAACCGTTTGCGCGTTCTGGCAGAGCGCAATATCGGCGTCGACATGAAGCC
GCTCATCGAAAAAGAAACCGATATGGAAGCGCAGGGCTTCACCGATCATCTTTTGAGCCTCGCCCGCGTCGGCGACCGTC
AGGTCGGCCTTGCTTTCGCGACCTCCAACCCGATCATGTATTATAATGCCGATCTTCTGAAGGCGGCAGGCGGCGATCCC
GACAATCCCCCCACCACCTGGGATGAAGTGATTGAGCTCGGCGGCAAGATCAAGGCACTCGGCAATGGCAATGAGGGCAT
CGATTTCCGCTGGCAGGGCGACGACTGGATGTTCTCCGCGCTGCTGTTCGGCGCAGGCGGCACCATGCTGACCGAAGACG
AGAAGAAAGTCGCCTTCAACGGACCGGAAGGGCTTGAAGCTTTCAAGCTCATTGATCGCATGGTGAAGGAAGGCGGTATG
CCGGTTCTGACCAAGGCTGCGGGCGAACAGGCTTTCGCGGCTGGCAAGGTCGGATTTTCGTTCCAGACAACCGGGGCTTT
ACGCAATACGATGAAGAATGTCGGTGACAAGTTCGATCTTCGCACGGCGAAAATCCCGCTTCTCAACGCCCAAAAGGGCC
ACCTGCCGACCGGCGGAAATGCGGTTGTCATCCTGACCGAAGATCCGGCCAAGCAGGATGCGGCGTGGAAATTCGCCAAG
TTCGCCGCTGGTCCTTATGGCGCTTCCGTTGTCGTTCCCGGCACTGGCTACGTGCCGAACAACGAACTGGCTGCAAAGTC
CGATGAATATCTTGGCAAGTTCTATGAGGAAAATCCGCTCTTCAAGGCCGGTCTCAGCCAGATGTCGCTGATGATCCCCT
GGTATGCCTTCCCCGGTTCAAATGGCGTGAAGGTAACGCAGACCATCGTGGACAATCTTTCGCGCGTTGTCGAACAGTCC
GCCACGCCGGAAGACGCCCTTGCCGATGCAGCAAAGGAAGTTCAACGATTGCTGCCGCGCCGTTGA

Upstream 100 bases:

>100_bases
CTGGCATTTCTCGCCGCCCAGCGCCGGTTCATCGAAGGCATCACCCTCACTGGCCTCAAGGGCTGAATTCTTCCCTTCCA
TCCTCCACAGGAGTTCCAAT

Downstream 100 bases:

>100_bases
TTGTTAGGCTGTCGTGACGAATCTGGAGCGGTTCCAGGTAAAACGAAGCCGCTGGGACCGCTCCATCTGTCAAAAGCATT
GCTTCGATATATCGGGACAT

Product: sn-glycerol-3-phosphate-binding periplasmic protein UgpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MKRFSSALAALAIVTGLASPAFADTTLNVHYPMPGFFKDVMADISKKFMEENPDIKINFVSPSATYEEGIQTIMRQAGTS
EMPDITFTGLNRLRVLAERNIGVDMKPLIEKETDMEAQGFTDHLLSLARVGDRQVGLAFATSNPIMYYNADLLKAAGGDP
DNPPTTWDEVIELGGKIKALGNGNEGIDFRWQGDDWMFSALLFGAGGTMLTEDEKKVAFNGPEGLEAFKLIDRMVKEGGM
PVLTKAAGEQAFAAGKVGFSFQTTGALRNTMKNVGDKFDLRTAKIPLLNAQKGHLPTGGNAVVILTEDPAKQDAAWKFAK
FAAGPYGASVVVPGTGYVPNNELAAKSDEYLGKFYEENPLFKAGLSQMSLMIPWYAFPGSNGVKVTQTIVDNLSRVVEQS
ATPEDALADAAKEVQRLLPRR

Sequences:

>Translated_421_residues
MKRFSSALAALAIVTGLASPAFADTTLNVHYPMPGFFKDVMADISKKFMEENPDIKINFVSPSATYEEGIQTIMRQAGTS
EMPDITFTGLNRLRVLAERNIGVDMKPLIEKETDMEAQGFTDHLLSLARVGDRQVGLAFATSNPIMYYNADLLKAAGGDP
DNPPTTWDEVIELGGKIKALGNGNEGIDFRWQGDDWMFSALLFGAGGTMLTEDEKKVAFNGPEGLEAFKLIDRMVKEGGM
PVLTKAAGEQAFAAGKVGFSFQTTGALRNTMKNVGDKFDLRTAKIPLLNAQKGHLPTGGNAVVILTEDPAKQDAAWKFAK
FAAGPYGASVVVPGTGYVPNNELAAKSDEYLGKFYEENPLFKAGLSQMSLMIPWYAFPGSNGVKVTQTIVDNLSRVVEQS
ATPEDALADAAKEVQRLLPRR
>Mature_421_residues
MKRFSSALAALAIVTGLASPAFADTTLNVHYPMPGFFKDVMADISKKFMEENPDIKINFVSPSATYEEGIQTIMRQAGTS
EMPDITFTGLNRLRVLAERNIGVDMKPLIEKETDMEAQGFTDHLLSLARVGDRQVGLAFATSNPIMYYNADLLKAAGGDP
DNPPTTWDEVIELGGKIKALGNGNEGIDFRWQGDDWMFSALLFGAGGTMLTEDEKKVAFNGPEGLEAFKLIDRMVKEGGM
PVLTKAAGEQAFAAGKVGFSFQTTGALRNTMKNVGDKFDLRTAKIPLLNAQKGHLPTGGNAVVILTEDPAKQDAAWKFAK
FAAGPYGASVVVPGTGYVPNNELAAKSDEYLGKFYEENPLFKAGLSQMSLMIPWYAFPGSNGVKVTQTIVDNLSRVVEQS
ATPEDALADAAKEVQRLLPRR

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=431, Percent_Identity=26.2180974477958, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 45564; Mature: 45564

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFSSALAALAIVTGLASPAFADTTLNVHYPMPGFFKDVMADISKKFMEENPDIKINFV
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
SPSATYEEGIQTIMRQAGTSEMPDITFTGLNRLRVLAERNIGVDMKPLIEKETDMEAQGF
CCCCHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCH
TDHLLSLARVGDRQVGLAFATSNPIMYYNADLLKAAGGDPDNPPTTWDEVIELGGKIKAL
HHHHHHHHHCCCCCEEEEEEECCCEEEECHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEE
GNGNEGIDFRWQGDDWMFSALLFGAGGTMLTEDEKKVAFNGPEGLEAFKLIDRMVKEGGM
CCCCCCCEEEECCCHHHHHHHHHCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHHCCC
PVLTKAAGEQAFAAGKVGFSFQTTGALRNTMKNVGDKFDLRTAKIPLLNAQKGHLPTGGN
CEEEHHCCCHHHHHCCCCCEEECHHHHHHHHHHCCCCCCCEEEECCEECCCCCCCCCCCC
AVVILTEDPAKQDAAWKFAKFAAGPYGASVVVPGTGYVPNNELAAKSDEYLGKFYEENPL
EEEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCC
FKAGLSQMSLMIPWYAFPGSNGVKVTQTIVDNLSRVVEQSATPEDALADAAKEVQRLLPR
HHHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
R
C
>Mature Secondary Structure
MKRFSSALAALAIVTGLASPAFADTTLNVHYPMPGFFKDVMADISKKFMEENPDIKINFV
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
SPSATYEEGIQTIMRQAGTSEMPDITFTGLNRLRVLAERNIGVDMKPLIEKETDMEAQGF
CCCCHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCH
TDHLLSLARVGDRQVGLAFATSNPIMYYNADLLKAAGGDPDNPPTTWDEVIELGGKIKAL
HHHHHHHHHCCCCCEEEEEEECCCEEEECHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEE
GNGNEGIDFRWQGDDWMFSALLFGAGGTMLTEDEKKVAFNGPEGLEAFKLIDRMVKEGGM
CCCCCCCEEEECCCHHHHHHHHHCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHHCCC
PVLTKAAGEQAFAAGKVGFSFQTTGALRNTMKNVGDKFDLRTAKIPLLNAQKGHLPTGGN
CEEEHHCCCHHHHHCCCCCEEECHHHHHHHHHHCCCCCCCEEEECCEECCCCCCCCCCCC
AVVILTEDPAKQDAAWKFAKFAAGPYGASVVVPGTGYVPNNELAAKSDEYLGKFYEENPL
EEEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCC
FKAGLSQMSLMIPWYAFPGSNGVKVTQTIVDNLSRVVEQSATPEDALADAAKEVQRLLPR
HHHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]