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The map label for this gene is xylF [H]

Identifier: 225686894

GI number: 225686894

Start: 1127816

End: 1128835

Strand: Direct

Name: xylF [H]

Synonym: BMEA_B1144

Alternate gene names: 225686894

Gene position: 1127816-1128835 (Clockwise)

Preceding gene: 225686873

Following gene: 225686895

Centisome position: 95.13

GC content: 54.71

Gene sequence:

>1020_bases
ATGAAACGTCGTAATTTTCTGGCAGGCGCGCTGGTCGCGGCAGCTCTCGGTATTGGGGCAATGGGTGCAACGCCTGCGTT
TGCATCGCCTGAACATCCGGTTATCGGCTTTTCCATTGACGATCTGCGCGTGGAGCGCTGGGCGCGCGACCGCGATTATT
TCATCGCGGCAGCGGAGAAGCTGGGGGCAAAGGTCAACGTCCAGTCGGCTGACGGCAACGAAGAAAAGCAGGTCAAGCAG
GTCGAAAACCTGATCTCGCAGGGCGTTGATGCCATCGTGATCGTTCCGATGAATTCAAAGGTTTTCGACGCGGTTGTCGC
CGATGCAAAAGCTTCGGGGATCAAGGTTCTTTCCTATGATCGCCTGATCCTGAATGCCGATATCGATGCCTACATTTCCT
TCGATAATGAGCGCGTTGGTTTCATGCAGGCGCAAGCCGTGCTGAAAGCAAAGCCGGAAGGTAATTATTACCTGCTCGGC
GGCTCGCCAACCGACAATAATGCGAAGCTGCTGCGTGCCGGTCAGGAAAAAGCGCTGAAGGAGGCCATGGATTCCGGAAA
GGTCAAGATCGTTGGTTCGCAATGGGTCAAGGAATGGAGCCCGACCGAAGCGCTCTCCATCATGGAAAATGCGCTGACCG
CCACACAAAACAAGATCGATGCCGTCGTTGCTTCCAATGACGGCACGGCAGGCGGCGCAATTCAGGCGCTCGCAGCACAG
GGCCTTGCAGGCAAGACTGCGGTTTCCGGTCAGGACAGCGATCTGGCAGCCGTCAAGCGTCTGGTCGATGGTACGCAGAC
CGTGACCGTTTACAAACCGCTCAAGCTGATTGCGGAAGAAGCAGCAAAGCTCACCGTGCAGATGGTGCGTGATGAAAAGC
CCGAGTTCAACGGCAAGATCAACAATGGTTCAAAGGACGTCGATACGCTTCTGCTGACGCCAACTGCTGTGACCAAGGAT
AATATCGACATCTATATAAAGGACGGCTTCTACACCAAGGAACAGATTGAAGGGAAATAA

Upstream 100 bases:

>100_bases
TCGGAAGCCGTTTTGTCGTGCCCGACTCCGGGGAGGGTTTGTCCGGGGCGAGGTCTTTTATCAACCGGCACAAAGCCGGC
GGTGGTTGGAGGAAACGTGC

Downstream 100 bases:

>100_bases
ACCTTCTGTTCTGCAAAGCTGATAACAGTTTGTGGGGCCAGATGGTGAAAATCTTTATTTTAACATCTGGCCTCGCATAG
ATCTGGCATTTTTTCCCAGC

Product: D-xylose ABC transporter substrate-binding protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKRRNFLAGALVAAALGIGAMGATPAFASPEHPVIGFSIDDLRVERWARDRDYFIAAAEKLGAKVNVQSADGNEEKQVKQ
VENLISQGVDAIVIVPMNSKVFDAVVADAKASGIKVLSYDRLILNADIDAYISFDNERVGFMQAQAVLKAKPEGNYYLLG
GSPTDNNAKLLRAGQEKALKEAMDSGKVKIVGSQWVKEWSPTEALSIMENALTATQNKIDAVVASNDGTAGGAIQALAAQ
GLAGKTAVSGQDSDLAAVKRLVDGTQTVTVYKPLKLIAEEAAKLTVQMVRDEKPEFNGKINNGSKDVDTLLLTPTAVTKD
NIDIYIKDGFYTKEQIEGK

Sequences:

>Translated_339_residues
MKRRNFLAGALVAAALGIGAMGATPAFASPEHPVIGFSIDDLRVERWARDRDYFIAAAEKLGAKVNVQSADGNEEKQVKQ
VENLISQGVDAIVIVPMNSKVFDAVVADAKASGIKVLSYDRLILNADIDAYISFDNERVGFMQAQAVLKAKPEGNYYLLG
GSPTDNNAKLLRAGQEKALKEAMDSGKVKIVGSQWVKEWSPTEALSIMENALTATQNKIDAVVASNDGTAGGAIQALAAQ
GLAGKTAVSGQDSDLAAVKRLVDGTQTVTVYKPLKLIAEEAAKLTVQMVRDEKPEFNGKINNGSKDVDTLLLTPTAVTKD
NIDIYIKDGFYTKEQIEGK
>Mature_339_residues
MKRRNFLAGALVAAALGIGAMGATPAFASPEHPVIGFSIDDLRVERWARDRDYFIAAAEKLGAKVNVQSADGNEEKQVKQ
VENLISQGVDAIVIVPMNSKVFDAVVADAKASGIKVLSYDRLILNADIDAYISFDNERVGFMQAQAVLKAKPEGNYYLLG
GSPTDNNAKLLRAGQEKALKEAMDSGKVKIVGSQWVKEWSPTEALSIMENALTATQNKIDAVVASNDGTAGGAIQALAAQ
GLAGKTAVSGQDSDLAAVKRLVDGTQTVTVYKPLKLIAEEAAKLTVQMVRDEKPEFNGKINNGSKDVDTLLLTPTAVTKD
NIDIYIKDGFYTKEQIEGK

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=303, Percent_Identity=61.3861386138614, Blast_Score=382, Evalue=1e-107,
Organism=Escherichia coli, GI1790526, Length=330, Percent_Identity=27.5757575757576, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36246; Mature: 36246

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRNFLAGALVAAALGIGAMGATPAFASPEHPVIGFSIDDLRVERWARDRDYFIAAAEK
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEEEHHH
LGAKVNVQSADGNEEKQVKQVENLISQGVDAIVIVPMNSKVFDAVVADAKASGIKVLSYD
HCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEEEC
RLILNADIDAYISFDNERVGFMQAQAVLKAKPEGNYYLLGGSPTDNNAKLLRAGQEKALK
EEEEECCCEEEEEECCCCCCHHHHHHHHEECCCCCEEEECCCCCCCCHHHHHCCHHHHHH
EAMDSGKVKIVGSQWVKEWSPTEALSIMENALTATQNKIDAVVASNDGTAGGAIQALAAQ
HHHCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHC
GLAGKTAVSGQDSDLAAVKRLVDGTQTVTVYKPLKLIAEEAAKLTVQMVRDEKPEFNGKI
CCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
NNGSKDVDTLLLTPTAVTKDNIDIYIKDGFYTKEQIEGK
CCCCCCCEEEEECCCEEECCCCEEEEECCCCCHHHCCCC
>Mature Secondary Structure
MKRRNFLAGALVAAALGIGAMGATPAFASPEHPVIGFSIDDLRVERWARDRDYFIAAAEK
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEEEHHH
LGAKVNVQSADGNEEKQVKQVENLISQGVDAIVIVPMNSKVFDAVVADAKASGIKVLSYD
HCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEEEC
RLILNADIDAYISFDNERVGFMQAQAVLKAKPEGNYYLLGGSPTDNNAKLLRAGQEKALK
EEEEECCCEEEEEECCCCCCHHHHHHHHEECCCCCEEEECCCCCCCCHHHHHCCHHHHHH
EAMDSGKVKIVGSQWVKEWSPTEALSIMENALTATQNKIDAVVASNDGTAGGAIQALAAQ
HHHCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHC
GLAGKTAVSGQDSDLAAVKRLVDGTQTVTVYKPLKLIAEEAAKLTVQMVRDEKPEFNGKI
CCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
NNGSKDVDTLLLTPTAVTKDNIDIYIKDGFYTKEQIEGK
CCCCCCCEEEEECCCEEECCCCEEEEECCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]