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The map label for this gene is dppB [H]

Identifier: 225686855

GI number: 225686855

Start: 1073253

End: 1074266

Strand: Direct

Name: dppB [H]

Synonym: BMEA_B1095

Alternate gene names: 225686855

Gene position: 1073253-1074266 (Clockwise)

Preceding gene: 225686852

Following gene: 225686856

Centisome position: 90.53

GC content: 57.59

Gene sequence:

>1014_bases
ATGTCGAACTATTTTTTTAAGCGTCTCATTGCGATGCCGTTTTTGATCCTGGGCATCGTGACAATTGCGTTTGCCTTGAC
GACGATAACAAAAGGTGATCCGCTCACCTCAATCGTTGCCGAGCAGCAGATGAACAATCCCGAAGTGGTCGCCGCAGCAA
AGGCCAAGTGGGGCCTGGATCGTAGCTTGCCGGAGCGTTACTTCATCTACCTGAAAAATCTTGCCGTTGGCGACATGGGC
ACCTCCTTCGTGACCAAACGACCGGTCGGTACAGATTTGATGGCGCGTCTGCCTGCCACCATGGAACTGGTCGTCGTGGC
GATGATCCTCGGATCGGTGATCGGGATCACACTCGGGATTTTGGCCGCTTATTATCGCGATAGTGTCATCGATCATCTGG
CGCGGCTTTTTGGACTGTTCGGGTCCTCTTTGTCCGTTTTCTGGCTTGGCCTGGCGGTTCTGTTTGTTTTTTCCGTCCAG
TTCGAGATACTGCCGGGGCCGGGCCGACTTGACCCTCGGATGACGCCACCGGCTGCCGTGACGGGTTTCATGACCATTGA
CAGCCTGCTTGCAGGCGACGGCGCGGCCTTTCGTGATGCGCTCGCCCACCTCATCCTCCCTTCGCTCGTACTCGGCTGGG
CAGTTGCGGGAACGATCTCCCGTCTGGTCCGTGCAAACATGCTGGACGTCATCGGACGGGAATTCATCCTCACGGCCCGT
GCAAAAGGGGCGGGGGAATTGCGAGTGGTGTTCCGCCACGCATTGCGCAACATCCTCGTGCCGGTCCTGACGGTCATCAG
CTACTCCTTCGCCTATCTCATCACCGGGGCGGTGCTGACCGAAACCATCTTCGCCTGGCCCGGCCTCGGGTCTTATGCGG
TCGAGGCAGCCAGAGCGCTTGATTTTCCCGCTATTATCGGCGTGACGATCGTGGGCGGGATCATGTTCCTCATGACCAAT
CTTTTGACCGATATTGCCTATGTGCTGGCCAATCCGCGCGTGCGCCTAGGCTAA

Upstream 100 bases:

>100_bases
AAATTTAATTCCATTTATATTGACGACTTCGATTTTGGTTGTCAATACTATGTGCAAGCCGCCGCAGAACGGTAACGAAA
TATCCAGACGGGAAGCAGGC

Downstream 100 bases:

>100_bases
AGGGGGAAGACATGGTTGCCTTATCGAACACGTCGGCACGCCAGTTCAAAATACCGGGCTGGTTCACGTTGCCTCTCCTG
ATCGGCATTCTCGTCGTCGG

Product: dipeptide transport system permease DppB

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSNYFFKRLIAMPFLILGIVTIAFALTTITKGDPLTSIVAEQQMNNPEVVAAAKAKWGLDRSLPERYFIYLKNLAVGDMG
TSFVTKRPVGTDLMARLPATMELVVVAMILGSVIGITLGILAAYYRDSVIDHLARLFGLFGSSLSVFWLGLAVLFVFSVQ
FEILPGPGRLDPRMTPPAAVTGFMTIDSLLAGDGAAFRDALAHLILPSLVLGWAVAGTISRLVRANMLDVIGREFILTAR
AKGAGELRVVFRHALRNILVPVLTVISYSFAYLITGAVLTETIFAWPGLGSYAVEAARALDFPAIIGVTIVGGIMFLMTN
LLTDIAYVLANPRVRLG

Sequences:

>Translated_337_residues
MSNYFFKRLIAMPFLILGIVTIAFALTTITKGDPLTSIVAEQQMNNPEVVAAAKAKWGLDRSLPERYFIYLKNLAVGDMG
TSFVTKRPVGTDLMARLPATMELVVVAMILGSVIGITLGILAAYYRDSVIDHLARLFGLFGSSLSVFWLGLAVLFVFSVQ
FEILPGPGRLDPRMTPPAAVTGFMTIDSLLAGDGAAFRDALAHLILPSLVLGWAVAGTISRLVRANMLDVIGREFILTAR
AKGAGELRVVFRHALRNILVPVLTVISYSFAYLITGAVLTETIFAWPGLGSYAVEAARALDFPAIIGVTIVGGIMFLMTN
LLTDIAYVLANPRVRLG
>Mature_336_residues
SNYFFKRLIAMPFLILGIVTIAFALTTITKGDPLTSIVAEQQMNNPEVVAAAKAKWGLDRSLPERYFIYLKNLAVGDMGT
SFVTKRPVGTDLMARLPATMELVVVAMILGSVIGITLGILAAYYRDSVIDHLARLFGLFGSSLSVFWLGLAVLFVFSVQF
EILPGPGRLDPRMTPPAAVTGFMTIDSLLAGDGAAFRDALAHLILPSLVLGWAVAGTISRLVRANMLDVIGREFILTARA
KGAGELRVVFRHALRNILVPVLTVISYSFAYLITGAVLTETIFAWPGLGSYAVEAARALDFPAIIGVTIVGGIMFLMTNL
LTDIAYVLANPRVRLG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=38.7573964497041, Blast_Score=240, Evalue=8e-65,
Organism=Escherichia coli, GI1787761, Length=305, Percent_Identity=40.655737704918, Blast_Score=225, Evalue=3e-60,
Organism=Escherichia coli, GI1787053, Length=335, Percent_Identity=31.3432835820896, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1789888, Length=336, Percent_Identity=30.6547619047619, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787497, Length=337, Percent_Identity=29.9703264094956, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1787550, Length=276, Percent_Identity=31.8840579710145, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1788504, Length=373, Percent_Identity=25.201072386059, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36353; Mature: 36222

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNYFFKRLIAMPFLILGIVTIAFALTTITKGDPLTSIVAEQQMNNPEVVAAAKAKWGLD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEHHHHHCCC
RSLPERYFIYLKNLAVGDMGTSFVTKRPVGTDLMARLPATMELVVVAMILGSVIGITLGI
CCCCHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LAAYYRDSVIDHLARLFGLFGSSLSVFWLGLAVLFVFSVQFEILPGPGRLDPRMTPPAAV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHH
TGFMTIDSLLAGDGAAFRDALAHLILPSLVLGWAVAGTISRLVRANMLDVIGREFILTAR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
AKGAGELRVVFRHALRNILVPVLTVISYSFAYLITGAVLTETIFAWPGLGSYAVEAARAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
DFPAIIGVTIVGGIMFLMTNLLTDIAYVLANPRVRLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SNYFFKRLIAMPFLILGIVTIAFALTTITKGDPLTSIVAEQQMNNPEVVAAAKAKWGLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEHHHHHCCC
RSLPERYFIYLKNLAVGDMGTSFVTKRPVGTDLMARLPATMELVVVAMILGSVIGITLGI
CCCCHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LAAYYRDSVIDHLARLFGLFGSSLSVFWLGLAVLFVFSVQFEILPGPGRLDPRMTPPAAV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHH
TGFMTIDSLLAGDGAAFRDALAHLILPSLVLGWAVAGTISRLVRANMLDVIGREFILTAR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
AKGAGELRVVFRHALRNILVPVLTVISYSFAYLITGAVLTETIFAWPGLGSYAVEAARAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
DFPAIIGVTIVGGIMFLMTNLLTDIAYVLANPRVRLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]